Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P15
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587...    31   1.2  
01_01_1162 - 9253034-9254229,9254387-9254456,9254473-9254567,925...    24   9.7  

>02_05_1120 +
           34257504-34258294,34258483-34258571,34258616-34258713,
           34259269-34259292,34259314-34259404,34259761-34259813,
           34259933-34260151
          Length = 454

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 780 PXVXXPXXFXXXSWXXPXFRPPPPPPXXR 866
           P +  P  F   S   P F PPPPPP  R
Sbjct: 12  PLLLFPRPFSSSSSPNPPFPPPPPPPNDR 40


>01_01_1162 -
           9253034-9254229,9254387-9254456,9254473-9254567,
           9255344-9255487,9255514-9255622
          Length = 537

 Score = 24.2 bits (50), Expect(2) = 9.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 828 PXFRPPPPPP 857
           P  RPPPPPP
Sbjct: 201 PTRRPPPPPP 210



 Score = 22.2 bits (45), Expect(2) = 9.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 840 PPPPPPXXR 866
           PPPPPP  R
Sbjct: 206 PPPPPPPPR 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,521,630
Number of Sequences: 37544
Number of extensions: 128074
Number of successful extensions: 3188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3007
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)