Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_P12
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 32 0.094
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 29 0.87
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 1.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 4.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.7
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 22 5.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 6.1
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 26 8.1
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 32.3 bits (70), Expect = 0.094
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = +1
Query: 199 PDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQG--SSGYTAPDGTPIQITYIADANG 372
PD + G G+E + G A+ +G S GYT+P + + Y +
Sbjct: 1500 PDAAAFSPLVQGGSEGRE--GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS 1557
Query: 373 YQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSPTQARGRPTYLSY 504
Y PS T+PA P+ + P + SPT PT SY
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTSPSY--SPTSPSYSPTSPSY 1599
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 29.1 bits (62), Expect = 0.87
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +1
Query: 169 QIVSQDADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQI 348
Q+ ++ +D+ PD S G E + + + V SS + G +
Sbjct: 96 QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGAASL 155
Query: 349 TYIADANGYQPSGAHLP-TTPAPXPNPRL 432
T+ A GY P+ LP + P PNP+L
Sbjct: 156 TFAAARRGYGPA---LPGSYTIPEPNPKL 181
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 259 ALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPXPNPRLHR 438
AL+ G S VQ + YT+ G P T +A A + +G ++ + PN
Sbjct: 43 ALLPTGLLMGSPFVQSPTSYTSMHGLPFSTTQMAAAPAHPTTGYNVSRVTS--PNVANFA 100
Query: 439 PGHRVHQNSPTQ 474
PG+ N+ TQ
Sbjct: 101 PGYFPLPNNTTQ 112
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +1
Query: 331 GTPIQITYI---ADANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSPT 471
GTP+++ + +A+ Y P A L TP+ P RP H PT
Sbjct: 329 GTPLKLPDVYGGVNASTYNPPRAPLQRTPSGSLTPLSSRPAHTSLPPIPT 378
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/62 (29%), Positives = 23/62 (37%)
Frame = +1
Query: 307 SSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSPTQARGR 486
SS YT TP+ T + N + +TP PN +V NS T G
Sbjct: 570 SSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPN-STSSSSTQVSWNSTTPITGT 628
Query: 487 PT 492
T
Sbjct: 629 ST 630
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 22.2 bits (45), Expect(2) = 5.9
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 397 PTTPAPXPNPRLHRPGH 447
P TP P R H+P H
Sbjct: 103 PATPIPVSASRHHKPHH 119
Score = 22.2 bits (45), Expect(2) = 5.9
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 439 PGHRVHQNSPTQ---ARGRPTYLSYMIVDKD 522
PGH+ + NSPT ++G ++++ I+ K+
Sbjct: 132 PGHKSNANSPTSESPSKGFGSFINNHILHKN 162
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 364 ANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSPTQA-RGRPTYLS 501
ANGY P+ P P P+ H P V SP +A +PT LS
Sbjct: 97 ANGYAAVYGGPPSQLPPPPQPQSH-PNVTVISASPARAIEQQPTILS 142
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -1
Query: 346 SEWEYHQGQCSRLNLG-RRWM 287
S+WEY G C+ + +G + WM
Sbjct: 201 SQWEYQVGPCAGIEMGDQLWM 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,606
Number of Sequences: 5004
Number of extensions: 53799
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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