Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P12
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    36   0.029
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    36   0.029
Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AF040654-7|AAK21450.2|  362|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 313  GYTAPDGTPIQITYIADANGYQPSG-AHLPTTPAPXPNPRLHRPGHRVHQN--SPTQARG 483
            G+++P  +P   TY   +  Y PS   + PT+P   P+P   +PG     +  SPT +  
Sbjct: 1772 GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPS-EQPGTSAQYSPTSPTYSPS 1830

Query: 484  RPTY 495
             PTY
Sbjct: 1831 SPTY 1834



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 319  TAPDGTPIQITYIADANGYQP-SGAHLPTTPAPXPNPRLHRPGHRVHQNSPTQARGRPTY 495
            ++P  +P   TY   +  Y P S  + PT+P   P    +  G     +SP  +   PTY
Sbjct: 1671 SSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTY 1730


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 313  GYTAPDGTPIQITYIADANGYQPSG-AHLPTTPAPXPNPRLHRPGHRVHQN--SPTQARG 483
            G+++P  +P   TY   +  Y PS   + PT+P   P+P   +PG     +  SPT +  
Sbjct: 1779 GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPS-EQPGTSAQYSPTSPTYSPS 1837

Query: 484  RPTY 495
             PTY
Sbjct: 1838 SPTY 1841



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 319  TAPDGTPIQITYIADANGYQP-SGAHLPTTPAPXPNPRLHRPGHRVHQNSPTQARGRPTY 495
            ++P  +P   TY   +  Y P S  + PT+P   P    +  G     +SP  +   PTY
Sbjct: 1678 SSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTY 1737


>Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical
           protein R07B5.9 protein.
          Length = 657

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
 Frame = +1

Query: 169 QIVSQDADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYT-APDGTPIQ 345
           ++  ++A V       Q   S  I G EQ + V+  + D     Q +  Y    D  PI 
Sbjct: 178 KVEEEEAKVTVSDINMQASESK-IEGIEQTSEVDIPKSDEDH--QSTEAYDRVEDEVPIT 234

Query: 346 ITYIADANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSPTQARGRPTYLSYMIVDKDD 525
              I   + Y  S  H PT   P P P+L +    ++Q++        +   +++ + DD
Sbjct: 235 DYNIPTPDSYHSSPPHSPT---PSPQPQLMQAQQNIYQDNDCHFAENDSKPPHLVSEVDD 291


>AF040654-7|AAK21450.2|  362|Caenorhabditis elegans Hypothetical
           protein R06B10.3 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 505 YNLNTLADLWLGWVSSDVLDGPGDVIWDWXQGL 407
           YNL++ +++W  +    + D   D  W+W  GL
Sbjct: 76  YNLSSNSNVWANYFWIGLTDMTADGSWEWIDGL 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,115
Number of Sequences: 27780
Number of extensions: 326874
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)