Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P12
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    82   8e-18
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 81.8 bits (193), Expect = 8e-18
 Identities = 44/95 (46%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
 Frame = +1

Query: 157 EADAQIVSQDADV-FPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDG 333
           + DA I SQ  +V F   Y   ++TSNGIS QE G       E   ++ QGS  YTAPDG
Sbjct: 24  DKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDG 82

Query: 334 TPIQITYIADANGYQPSGAHLPTTPAPXPNPRLHR 438
             + ITY+AD NG+Q  G+H+PT P P P P + R
Sbjct: 83  QQVSITYVADENGFQVQGSHIPTAP-PIP-PEIQR 115


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +1

Query: 340 IQITYIADANGYQ--PSGAHLPTTPAPXPNPRLHRPGHRVHQNSPTQARGRPTYLSY 504
           IQ  Y+ D N     P  A    + +P    R     H +  +SP + R  P Y S+
Sbjct: 17  IQGLYLLDNNDSSGIPHSAESSASNSPDHYERFSPSTHLMDLSSPPEHRDLPIYQSH 73


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 577  TRHINDRQCYGLRCFNNSRPYQLSYN 500
            +RH    +  GL C N  + Y  S+N
Sbjct: 1454 SRHATSHELKGLLCGNTYQLYLTSHN 1479


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 577  TRHINDRQCYGLRCFNNSRPYQLSYN 500
            +RH    +  GL C N  + Y  S+N
Sbjct: 1450 SRHATSHELKGLLCGNTYQLYLTSHN 1475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,584
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)