Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P11
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    31   0.23 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.93 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   1.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   8.7  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 925 RGGRGXGXXXLXGGGXXXGAXGGFXGG 845
           RGG G G     GGG   G+ GGF GG
Sbjct: 159 RGGFGGGSRGGFGGGSRGGSRGGFRGG 185



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = -1

Query: 925 RGGRGXGXXXLXG---GGXXXGAXGGFXGG--GGXXXVFXXGGGG 806
           RGGRG       G   GG   G+ GGF GG  GG    F  G  G
Sbjct: 144 RGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -1

Query: 922 GGRGXGXXXLXGG-GXXXGAXGGFXGGGGXXXVFXXGGGGP 803
           GG   G     GG G   G  GGF GG G       G GGP
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 922 GGRGXGXXXLXGGGXXXGAXGGFXGGGGXXXVFXXGGGGP 803
           GG G G      G    G  GGF G G         GGGP
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP 230


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 1.8
 Identities = 16/56 (28%), Positives = 17/56 (30%), Gaps = 7/56 (12%)
 Frame = -2

Query: 606 KXPXPPQTPRAXVFLXXXXXXXXKKXPPX-------PXGGGGXFXGEKXPPPPPXR 460
           K P PP + R                PP        P  G G       PPPPP R
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344



 Score = 22.6 bits (46), Expect(2) = 1.8
 Identities = 12/50 (24%), Positives = 13/50 (26%)
 Frame = -2

Query: 348 PXFXGGGPXPXXXFFXXGXPXPPXRGXAXPGXXXPPXXGGKKXXXXXXPP 199
           P     G  P         P PP R     G   PP    +       PP
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/40 (42%), Positives = 17/40 (42%)
 Frame = -1

Query: 925 RGGRGXGXXXLXGGGXXXGAXGGFXGGGGXXXVFXXGGGG 806
           RGG G G     GGG   GA GG  G GG         GG
Sbjct: 25  RGGFGGGRGGARGGG-RGGARGGRGGRGGARGGRGGSSGG 63



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -1

Query: 925 RGGRGXGXXXLXGGGXXXGAXGGFXGGGGXXXVFXXGG 812
           RGGRG       G G   G  GGF GG G       GG
Sbjct: 8   RGGRGGSRG---GRGGFNGGRGGFGGGRGGARGGGRGG 42


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 528 PPXPXGGGGXFXGEKXPPPPPXRXKKK 448
           PP P   G     +  PPPPP   KK+
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 886 GGXXXGAXGGFXGGGGXXXVFXXGGG 809
           GG   G  GGF G GG       GGG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGG 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,412
Number of Sequences: 5004
Number of extensions: 28719
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)