Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P10
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    48   2e-06
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    43   7e-05
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    39   0.001
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    36   0.006
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    33   0.044
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    30   0.41 
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    27   3.8  

>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 27/70 (38%), Positives = 32/70 (45%)
 Frame = +3

Query: 429 PGVLSMANAGADTXGSXXFITTVKXSXLDXXXXXXXXXXXXLALVKXXXXFGXQSGKXSX 608
           PG+LSMANAG +T GS  FITTV    LD            + +VK     G  SG    
Sbjct: 93  PGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRA 152

Query: 609 XXXIXXCGPI 638
              I  CG +
Sbjct: 153 RIVIDKCGTV 162


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = +3

Query: 429 PGVLSMANAGADTXGSXXFITTVKXSXLD 515
           PG+LSMANAG D+ GS  FITTVK   LD
Sbjct: 118 PGLLSMANAGPDSNGSQFFITTVKTPWLD 146


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = +3

Query: 429 PGVLSMANAGADTXGSXXFITTVKXSXLD 515
           PG+LSMANAG D+ G   FITTV    LD
Sbjct: 103 PGLLSMANAGKDSNGCQFFITTVPCDFLD 131


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = +3

Query: 429 PGVLSMANAGADTXGSXXFITTVKXSXLD 515
           P +LSMANAG +T GS  FITTV    LD
Sbjct: 98  PFLLSMANAGPNTNGSQFFITTVPTPHLD 126


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 33.5 bits (73), Expect = 0.044
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +3

Query: 426 GPGVLSMANAGADTXGSXXFITTVKXSXLD 515
           G G+LSMANAG +T  S  FIT      LD
Sbjct: 84  GAGILSMANAGPNTNSSQFFITLAPTPWLD 113


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 429 PGVLSMANAGADTXGSXXFITTVKXSXLD 515
           P  +SMAN+G +T GS  FITT     LD
Sbjct: 538 PFTVSMANSGPNTNGSQFFITTDLTPWLD 566


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 470 WFPXLHHHC 496
           WFP +HHHC
Sbjct: 97  WFPEVHHHC 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,515
Number of Sequences: 5004
Number of extensions: 9558
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)