Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P09
         (941 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   2.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   6.0  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
 Frame = +3

Query: 600 PGPPXPPXAXXARRXPP-PXPPP 665
           PGP  PP        PP P  PP
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPP 182


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 913 PPPPPPR 933
           PPPPPPR
Sbjct: 732 PPPPPPR 738


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 17/62 (27%), Positives = 17/62 (27%)
 Frame = +3

Query: 525 PPPPXRXPRXXXXXXAAXPRXXXGGPGPPXPPXAXXARRXPPPXPPPXXGGXGXXPPPAG 704
           P P  R          A      GGP     P     RR      P   GG    P PA 
Sbjct: 277 PAPAVRAAGDAAAARGAARADGAGGPLHDHRPALAQQRRVAAVQVPQLAGGGRRGPGPAR 336

Query: 705 XR 710
            R
Sbjct: 337 SR 338


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,185
Number of Sequences: 336
Number of extensions: 4303
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26478848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)