Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_P08
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 171 1e-43
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 171 1e-43
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 28 2.0
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 2.0
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 4.7
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.2
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 171 bits (416), Expect = 1e-43
Identities = 78/129 (60%), Positives = 96/129 (74%)
Frame = +1
Query: 322 KXCGKXQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGXPIMS 501
K GK FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IG +MS
Sbjct: 78 KIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMS 137
Query: 502 VRSSDRWKAXVIEALRRAKFXFPGRQKIYVSKKWGFTKYERDEFEKLRXEGRLXNDGCIV 681
VR+ D +A IEALRR ++ FPG+Q+I VSKKWGF++Y RDE+ + R G + DGC
Sbjct: 138 VRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYA 197
Query: 682 QYRPEHGPL 708
++ + G L
Sbjct: 198 KFLNKRGSL 206
Score = 74.9 bits (176), Expect = 1e-14
Identities = 38/71 (53%), Positives = 44/71 (61%)
Frame = +3
Query: 159 RGVPXPKLRIFDLGXQRAPVXXFPLCVHLVSDXXXQLSSXALEAGRICCNKXLXKXLRKG 338
R VP K+RIFDLG +RA V FPLC+HLVS+ Q++S ALEA RIC NK L K K
Sbjct: 24 RAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKD 83
Query: 339 SVPYPHETSPF 371
S PF
Sbjct: 84 SFHLRVRAHPF 94
Score = 29.1 bits (62), Expect = 0.88
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 95 RRPARCXRXCXXXPXPXSXF 154
RRPARC R C P P S +
Sbjct: 3 RRPARCYRYCKNKPYPKSRY 22
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 171 bits (415), Expect = 1e-43
Identities = 78/129 (60%), Positives = 96/129 (74%)
Frame = +1
Query: 322 KXCGKXQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGXPIMS 501
K GK FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IG +MS
Sbjct: 78 KIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMS 137
Query: 502 VRSSDRWKAXVIEALRRAKFXFPGRQKIYVSKKWGFTKYERDEFEKLRXEGRLXNDGCIV 681
VR+ D +A IEALRR ++ FPG+Q+I VSKKWGF++Y RDE+ + R G + DGC
Sbjct: 138 VRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYA 197
Query: 682 QYRPEHGPL 708
++ + G L
Sbjct: 198 KFLNKRGSL 206
Score = 74.9 bits (176), Expect = 1e-14
Identities = 38/71 (53%), Positives = 44/71 (61%)
Frame = +3
Query: 159 RGVPXPKLRIFDLGXQRAPVXXFPLCVHLVSDXXXQLSSXALEAGRICCNKXLXKXLRKG 338
R VP K+RIFDLG +RA V FPLC+HLVS+ Q++S ALEA RIC NK L K K
Sbjct: 24 RAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKD 83
Query: 339 SVPYPHETSPF 371
S PF
Sbjct: 84 SFHLRVRAHPF 94
Score = 29.1 bits (62), Expect = 0.88
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 95 RRPARCXRXCXXXPXPXSXF 154
RRPARC R C P P S +
Sbjct: 3 RRPARCYRYCKNKPYPKSRY 22
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 503 CALVTGGRXXSSRLCAVPSSXSPDVKRSTYQRSGVSQSMNVMSLRSCVXRAAS 661
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Frame = +1
Query: 361 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGXPIMSVRSSDRWKA 528
L P R+ C G GK +G AR+ IG + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 529 XVIEALRRAKFXFPGRQKIYVSK 597
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 533 SSRLCAVPSSXSPDVKRSTYQRSGVSQSMNVMSLRSCVXRAASLMTAALCST 688
SS + P+S SPD+K YQ G++ + L+ A + C T
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQT 422
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 465 STLRLAKRTTHPSLEPISSS 406
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,752
Number of Sequences: 5004
Number of extensions: 39621
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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