Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P05
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    28   1.5  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    27   4.7  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    26   6.2  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +3

Query: 597 KNKLQGDTQKTVETALSNYLELAEHRKQFVFKDFSEEDCSYTDQFKTDSFTSXLLVMIVS 776
           KN +Q  +   +E  + +++ELA  R Q   +   +    Y D  +       +++ +VS
Sbjct: 76  KNAVQNTSVTAIENVVKHFIELANKRVQEAQEKADKISVEYVDDLEATETPESIMMSLVS 135


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 486 FFILSTDYDEYAIAYXCKTLKKKTRTHYVFTW 581
           FF+ STD  +Y   Y  +   KK   H+   W
Sbjct: 111 FFVTSTDVFKYLDEYERRVRSKKALGHFPVVW 142


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 165 KRHTKRYRARNNNIVKTSDWYERCRSNGLAPH 70
           ++ +K+       +  T+  Y  CRSNGL PH
Sbjct: 93  EKKSKKKAKDEKPLTYTTGGYLYCRSNGLIPH 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,839
Number of Sequences: 5004
Number of extensions: 66165
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)