Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_P05
(889 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein. 40 0.009
M16696-1|AAA51764.1| 189|Homo sapiens APOD protein. 40 0.009
J02611-1|AAB59517.1| 189|Homo sapiens APOD protein. 40 0.009
CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein. 40 0.009
CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein. 40 0.009
BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein. 40 0.009
BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein. 40 0.009
BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein. 40 0.009
X00129-1|CAA24959.1| 199|Homo sapiens protein ( Human mRNA for ... 37 0.11
BC020633-1|AAH20633.1| 201|Homo sapiens retinol binding protein... 37 0.11
AL356214-6|CAH72329.1| 199|Homo sapiens retinol binding protein... 37 0.11
AL356214-5|CAH72328.1| 201|Homo sapiens retinol binding protein... 37 0.11
X02824-1|CAB46489.1| 70|Homo sapiens protein ( Human gene frag... 36 0.15
>S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein.
Length = 98
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 483 PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILTRTKNKLQGDTQKTVETALSN 650
P++IL+TDY+ YA+ Y C + + H F WIL R N L +T +++ L++
Sbjct: 26 PYWILATDYENYALVYSCTCIIQ--LFHVDFAWILARNPN-LPPETVDSLKNILTS 78
>M16696-1|AAA51764.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 483 PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILTRTKNKLQGDTQKTVETALSN 650
P++IL+TDY+ YA+ Y C + + H F WIL R N L +T +++ L++
Sbjct: 117 PYWILATDYENYALVYSCTCIIQ--LFHVDFAWILARNPN-LPPETVDSLKNILTS 169
>J02611-1|AAB59517.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 483 PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILTRTKNKLQGDTQKTVETALSN 650
P++IL+TDY+ YA+ Y C + + H F WIL R N L +T +++ L++
Sbjct: 117 PYWILATDYENYALVYSCTCIIQ--LFHVDFAWILARNPN-LPPETVDSLKNILTS 169
>CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 483 PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILTRTKNKLQGDTQKTVETALSN 650
P++IL+TDY+ YA+ Y C + + H F WIL R N L +T +++ L++
Sbjct: 117 PYWILATDYENYALVYSCTCIIQ--LFHVDFAWILARNPN-LPPETVDSLKNILTS 169
>CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 483 PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILTRTKNKLQGDTQKTVETALSN 650
P++IL+TDY+ YA+ Y C + + H F WIL R N L +T +++ L++
Sbjct: 117 PYWILATDYENYALVYSCTCIIQ--LFHVDFAWILARNPN-LPPETVDSLKNILTS 169
>BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 483 PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILTRTKNKLQGDTQKTVETALSN 650
P++IL+TDY+ YA+ Y C + + H F WIL R N L +T +++ L++
Sbjct: 117 PYWILATDYENYALVYSCTCIIQ--LFHVDFAWILARNPN-LPPETVDSLKNILTS 169
>BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 483 PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILTRTKNKLQGDTQKTVETALSN 650
P++IL+TDY+ YA+ Y C + + H F WIL R N L +T +++ L++
Sbjct: 117 PYWILATDYENYALVYSCTCIIQ--LFHVDFAWILARNPN-LPPETVDSLKNILTS 169
>BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 483 PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILTRTKNKLQGDTQKTVETALSN 650
P++IL+TDY+ YA+ Y C + + H F WIL R N L +T +++ L++
Sbjct: 117 PYWILATDYENYALVYSCTCIIQ--LFHVDFAWILARNPN-LPPETVDSLKNILTS 169
>X00129-1|CAA24959.1| 199|Homo sapiens protein ( Human mRNA for
retinol binding protein (RBP). ).
Length = 199
Score = 36.7 bits (81), Expect = 0.11
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 420 DAGNKAQFIVSHEGGDKVLQF---PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILT 590
D + A+F + + G LQ +I+ TDYD YA+ Y C+ L ++++ +
Sbjct: 95 DTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFS 154
Query: 591 RTKNKLQGDTQKTV 632
R N L + QK V
Sbjct: 155 RDPNGLPPEAQKIV 168
>BC020633-1|AAH20633.1| 201|Homo sapiens retinol binding protein 4,
plasma protein.
Length = 201
Score = 36.7 bits (81), Expect = 0.11
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 420 DAGNKAQFIVSHEGGDKVLQF---PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILT 590
D + A+F + + G LQ +I+ TDYD YA+ Y C+ L ++++ +
Sbjct: 97 DTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFS 156
Query: 591 RTKNKLQGDTQKTV 632
R N L + QK V
Sbjct: 157 RDPNGLPPEAQKIV 170
>AL356214-6|CAH72329.1| 199|Homo sapiens retinol binding protein 4,
plasma protein.
Length = 199
Score = 36.7 bits (81), Expect = 0.11
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 420 DAGNKAQFIVSHEGGDKVLQF---PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILT 590
D + A+F + + G LQ +I+ TDYD YA+ Y C+ L ++++ +
Sbjct: 95 DTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFS 154
Query: 591 RTKNKLQGDTQKTV 632
R N L + QK V
Sbjct: 155 RDPNGLPPEAQKIV 168
>AL356214-5|CAH72328.1| 201|Homo sapiens retinol binding protein 4,
plasma protein.
Length = 201
Score = 36.7 bits (81), Expect = 0.11
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 420 DAGNKAQFIVSHEGGDKVLQF---PFFILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILT 590
D + A+F + + G LQ +I+ TDYD YA+ Y C+ L ++++ +
Sbjct: 97 DTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFS 156
Query: 591 RTKNKLQGDTQKTV 632
R N L + QK V
Sbjct: 157 RDPNGLPPEAQKIV 170
>X02824-1|CAB46489.1| 70|Homo sapiens protein ( Human gene
fragment for retinol binding protein (RBP) (exon 5). ).
Length = 70
Score = 36.3 bits (80), Expect = 0.15
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 489 FILSTDYDEYAIAYXCKTLKKKTRTHYVFTWILTRTKNKLQGDTQKTV 632
+I+ TDYD YA+ Y C+ L ++++ +R N L + QK V
Sbjct: 4 WIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIV 51
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,135,568
Number of Sequences: 237096
Number of extensions: 2544118
Number of successful extensions: 4444
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4440
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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