Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P04
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   104   8e-23
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   102   4e-22
05_06_0097 + 25548272-25548664                                         30   2.1  
02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420     30   2.8  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    29   5.0  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    29   6.6  

>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  104 bits (250), Expect = 8e-23
 Identities = 50/74 (67%), Positives = 59/74 (79%)
 Frame = +1

Query: 88  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 267
           M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60

Query: 268 RRFNGGVGRCAQAK 309
           RR+ GGVGR AQAK
Sbjct: 61  RRYCGGVGRTAQAK 74



 Score =   99 bits (238), Expect = 2e-21
 Identities = 46/62 (74%), Positives = 51/62 (82%)
 Frame = +2

Query: 332 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 511
           RWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A   RRRTYRAHGRINPYMS
Sbjct: 83  RWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMS 142

Query: 512 SP 517
           SP
Sbjct: 143 SP 144


>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  102 bits (244), Expect = 4e-22
 Identities = 48/71 (67%), Positives = 55/71 (77%)
 Frame = +2

Query: 305 QSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 484
           +S  +  + RWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A   RRRTYRA
Sbjct: 86  KSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRA 145

Query: 485 HGRINPYMSSP 517
           HGRINPYMSSP
Sbjct: 146 HGRINPYMSSP 156



 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 49/86 (56%), Positives = 58/86 (67%), Gaps = 12/86 (13%)
 Frame = +1

Query: 88  MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYL 231
           MG+YS EP NP KS KA G +LRVHFK            NT ETA A+RK+PL +A RYL
Sbjct: 1   MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60

Query: 232 KNVIEKKECIPFRRFNGGVGRCAQAK 309
           ++VI  K+ IPFRR+ GGVGR AQ K
Sbjct: 61  EDVIAHKQAIPFRRYCGGVGRTAQVK 86



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 501 PTCRLPXHIEVCLSEREDAVARVAPTDDAP 590
           P    P H+E+ LSE+E+AV +   T  AP
Sbjct: 151 PYMSSPCHVELILSEKEEAVKKEPETTIAP 180


>05_06_0097 + 25548272-25548664
          Length = 130

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 437 IQVNRAPCLRRRTYRAHGRINPYMSSPXPHRSMSQRTRRCCRQGSPY**C 586
           I V RAP  RR +   HG   P  +   PH  ++ R RRC  + + +  C
Sbjct: 56  IPVTRAPTTRRIS---HGSTAPAAAFVPPHELVAARARRCSEERAAFSVC 102


>02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420
          Length = 256

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 449 RAPCLRRRTYRAHGRINPYMSSPXPHRSMSQRTRRCCRQ 565
           RA  LRRR     GR++P  ++  P  SM   +RR CR+
Sbjct: 217 RAATLRRRARHRAGRLSPSPATAAP-ASMPAASRRVCRR 254


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 341  KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 466
            K   EF  Q+ + +E  S  + + L +  + I H+  + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 404  FCCQRLIQRSSITARGIRRISWASXPCVVPNCFA*AQRPTPP 279
            F C RL  +S+   RG+  I WA+   V P   A   +P  P
Sbjct: 1129 FNCHRLADKSNFKKRGLLGIEWAANGPVQPFIQAGPSKPKYP 1170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,795,960
Number of Sequences: 37544
Number of extensions: 356053
Number of successful extensions: 897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)