Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P04
         (886 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   3.1  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   4.1  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   7.1  
L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.       23   9.4  

>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 592  AGASSVGATLATASSRSLRHTSMWXGRRHVGVDATVSTVCT 470
            A A+   +  A  + R +    +W  RRH  VD  +S V T
Sbjct: 890  AAAAPTASRYAVWAHRMIPDLHLWMSRRHGEVDFHLSQVLT 930


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 210 PSCCSLPQKRD*KERVYSIPSLQRRRWSLCSSKAVWHNTGXAGPRNPPN 356
           PS   L   R     VYS+    RRRWSLC  K  + +      R+PP+
Sbjct: 9   PSGARLSISRGSPTGVYSV----RRRWSLC-QKLHFRDQVCCVQRSPPH 52


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 335  WPKKSAEFLLQLLRNAESNADNKTLDVDRLVI---DHIQVNRAPCLR 466
            W +   E+L  L + A+ N +  +++  RLVI   D++ V++ P  R
Sbjct: 1641 WNRWHREYLSTLQKRAKWNKNAISIEPGRLVILQEDNVAVSKWPMAR 1687


>L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 421 ASHRPHSGKSRALPTQTYIPCSRS 492
           A+ RPH  K + L  Q   PC +S
Sbjct: 112 AAKRPHMKKKKVLFHQDNAPCHKS 135


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,245
Number of Sequences: 2352
Number of extensions: 12749
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95093730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)