Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_P04
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   120   1e-27
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    93   2e-19

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  120 bits (289), Expect = 1e-27
 Identities = 54/78 (69%), Positives = 64/78 (82%)
 Frame = +1

Query: 97  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 276
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 277 NGGVGRCAQAKQFGTTQG 330
           +GG+GR AQ KQ+ TTQG
Sbjct: 66  HGGIGRAAQTKQWNTTQG 83



 Score =  104 bits (250), Expect = 7e-23
 Identities = 49/62 (79%), Positives = 53/62 (85%)
 Frame = +2

Query: 332 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 511
           RWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMS
Sbjct: 84  RWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMS 143

Query: 512 SP 517
           SP
Sbjct: 144 SP 145



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +3

Query: 501 PTCRLPXHIEVCLSEREDAVARVAPTDDA 587
           P    P HIEV L+E+ED V++  PTDDA
Sbjct: 140 PYMSSPCHIEVILAEKEDVVSK--PTDDA 166


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 42/60 (70%), Positives = 49/60 (81%)
 Frame = +1

Query: 97  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 276
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 41/52 (78%), Positives = 44/52 (84%)
 Frame = +2

Query: 362 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 517
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSP
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSP 117



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +3

Query: 501 PTCRLPXHIEVCLSEREDAVARVAPTDDA 587
           P    P HIEV L+E+ED V++  PTDDA
Sbjct: 112 PYMSSPCHIEVILAEKEDVVSK--PTDDA 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,538,336
Number of Sequences: 27780
Number of extensions: 288964
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)