Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O23
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.30 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.9  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   6.4  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 16/55 (29%), Positives = 18/55 (32%)
 Frame = -2

Query: 416 PP*XVXXPPGPNTXXP*AXPVSLPRXXLKNXXXXPPLPKXPXXXXPKXPKTXPPP 252
           PP     PP P+   P    +  P          P  P  P    P  PK  PPP
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -2

Query: 404 VXXPPGPNTXXP*AXPVSLPRXXLKNXXXXPPLPKXPXXXXPKXPKTXPP 255
           V  PP P    P     +LP     +    PP+P  P    P  P + PP
Sbjct: 385 VSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP-TPPSLPPSAPPSLPP 433


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = -2

Query: 395 PPGPNTXXP*AXPVSLPRXXLKNXXXXPPLPKXPXXXXPKXPKTXPPP 252
           PP P    P   P  +P          PP P  P       P   PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/47 (27%), Positives = 17/47 (36%)
 Frame = +3

Query: 93  FXGVVXRCTPCMRXRSXFYASWLRXXVSDXXPXFKVXPTPSRYSRLC 233
           F G     T  M     F + W     SD    F + P    ++RLC
Sbjct: 127 FVGSTSSLTGLMSQLHFFISKWKFPNFSDLSKGFYISPNERNFTRLC 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,657
Number of Sequences: 5004
Number of extensions: 15843
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)