Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O23
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   6.1  

>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
 Frame = -2

Query: 425 SRRPP*XVXXPPGPNTXXP*AXPVSLPRXXLKNXXXXPPLP--KXPXXXXPKXPKTXPPP 252
           S  PP      P P +  P   P   P    K+    PPLP    P    P  P   PPP
Sbjct: 463 STTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPP 522

Query: 251 XXXXQ 237
               Q
Sbjct: 523 PALEQ 527


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/55 (34%), Positives = 22/55 (40%)
 Frame = +1

Query: 253 GGGXVFGXLGXXXXGLFGXGGXXXXFFNXXRGKLTGXAYGXXVLGPGGXXTXYGG 417
           GGG   G  G    G +G GG          G + G  YG   +G GG    YGG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/63 (30%), Positives = 21/63 (33%)
 Frame = -2

Query: 425 SRRPP*XVXXPPGPNTXXP*AXPVSLPRXXLKNXXXXPPLPKXPXXXXPKXPKTXPPPXX 246
           S  PP      P P +  P   P   P    K+    PPLP  P       P   PPP  
Sbjct: 456 STTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLP--PIATPSSVPPPPPPPPA 513

Query: 245 XXQ 237
             Q
Sbjct: 514 LEQ 516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,827
Number of Sequences: 27780
Number of extensions: 105488
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)