Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O22
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    29   1.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        29   1.2  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    27   4.8  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   8.5  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   8.5  

>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 438 LGRALDVLPRLFQSLLGLAVRVSERSPGDSW 346
           +G  +  L RLF SL GL    ++ SPG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 96   ECGGDANRTATQRSVSKS*GNSHIVRS 16
            ECGG  ++T T R +S S GNS   R+
Sbjct: 984  ECGGSTDKTETARLISFSNGNSEEERN 1010


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 588 ASFSLVSCTFEDTFFANFWDSCTVFCTAACSFSRRAVAFFSTSRVGLAE 442
           A+FS+V    E+  + NF+D   + C + CS     +     S+V L+E
Sbjct: 314 ANFSVV---VEEPIYGNFYDREVITCGSPCSGEALILGLNVLSKVDLSE 359


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +2

Query: 548 KVSSNVQET--NEKLAPKIKAAYD 613
           +V  N++ET   EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 415 ASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQAL 293
           AST+ K PWP  + L  +P     + +  CS+ +E  ++ +
Sbjct: 38  ASTLEKEPWPASTALLVMPG---GRDMGYCSSFNETIYRKI 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,344
Number of Sequences: 5004
Number of extensions: 38611
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)