Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O21
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.92 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = -2

Query: 601 EGXGGGXSXWXQGXGTXGGGGXXLXVDXXGXGGGGXGEGXG 479
           +  GG  S    G  T   GG  +     G GGGG G   G
Sbjct: 17  DNLGGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = -1

Query: 557 DEXXGRPXPDXGXXXXGGGGGGXGXXGEXRGGGGGXG 447
           D   G      G    G  GG         GGGGG G
Sbjct: 17  DNLGGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 486 PSPXPPPPXPXXS 524
           P P PPPP P  S
Sbjct: 339 PKPAPPPPPPSSS 351



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 480 PXPSPXPPPP 509
           P P+P PPPP
Sbjct: 339 PKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 565  PATXXTXPPPPPP 603
            P +    PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 489  SPXPPPPXP 515
            SP PPPP P
Sbjct: 1856 SPEPPPPPP 1864


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 252 TPGAXXKNXKPTAA 293
           TPG   KN +PT+A
Sbjct: 892 TPGCSSKNGEPTSA 905


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,358
Number of Sequences: 438
Number of extensions: 4660
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)