Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O20
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     29   3.3  
AF078787-10|AAC26956.1|  352|Caenorhabditis elegans Hypothetical...    29   5.8  

>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 267 PXXXWKQGSXWLTPEXNT--VSKHVLTLTNVTEEGKYTCV 380
           P   WK+    +  + +T  + K+VLTLT+V     +TCV
Sbjct: 280 PRVFWKKTDLMVLDDPSTAPIGKNVLTLTHVESTENFTCV 319


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 267 PXXXWKQGSXWLTPEXNT--VSKHVLTLTNVTEEGKYTCV 380
           P   WK+    +  + +T  + K+VLTLT+V     +TCV
Sbjct: 280 PRVFWKKTDLMVLDDPSTAPIGKNVLTLTHVESTENFTCV 319


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 267 PXXXWKQGSXWLTPEXNT--VSKHVLTLTNVTEEGKYTCV 380
           P   WK+    +  + +T  + K+VLTLT+V     +TCV
Sbjct: 280 PRVFWKKTDLMVLDDPSTAPIGKNVLTLTHVESTENFTCV 319


>AF078787-10|AAC26956.1|  352|Caenorhabditis elegans Hypothetical
           protein T17A3.10 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 330 HVLTLTNVTEEGKYTCVFK 386
           HV T+ N+T+ G YTCV +
Sbjct: 190 HVTTVKNITKSGVYTCVIE 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,538,000
Number of Sequences: 27780
Number of extensions: 183623
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)