Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_O17
(932 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 259 3e-69
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 30 2.3
02_01_0061 + 442288-442411,442445-445498,445630-446000 30 3.0
02_02_0034 - 6246183-6246553,6246672-6249699 29 4.0
02_02_0030 - 6207784-6208154,6208286-6211310 29 4.0
02_02_0025 + 6183328-6186127,6186265-6186623 29 4.0
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 5.3
02_02_0035 - 6253446-6255473 29 5.3
03_01_0501 + 3776369-3777337 29 7.0
08_02_0478 + 17621678-17623768 28 9.2
08_01_0346 - 3063440-3064189 28 9.2
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 259 bits (634), Expect = 3e-69
Identities = 130/171 (76%), Positives = 139/171 (81%)
Frame = +2
Query: 116 GVFXAXLNXFLTXXLAEXGXSGVXVRVTPIRSEXIIMATRXQXVLGXXGRXIRELTSVVX 295
GVF A LN LT LAE G SGV VRVTP+R+E II ATR Q VLG GR IRELTSVV
Sbjct: 17 GVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 76
Query: 296 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYXLIGGLAVRRACYGVLRFIMESGARGC 475
KRFN PE VELYAEKV RGLCAIAQAESLRY L+GGLAVRRACYGVLRF+MESGA+GC
Sbjct: 77 KRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGC 136
Query: 476 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGXK 628
EV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLG K
Sbjct: 137 EVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIK 187
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 627 RXKIMLPWDQXGXNGPXKPQPXHILVN 707
+ KIML WD G GP P P + ++
Sbjct: 187 KVKIMLDWDPKGKQGPMTPLPDLVTIH 213
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = -2
Query: 616 YSLSEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 437
+ L++ + GS +++ V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 436 TIASTTYSETSDKLVS 389
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>02_01_0061 + 442288-442411,442445-445498,445630-446000
Length = 1182
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 740 LEGARGSSLGSVNQDVXWLWLXRXVLAXLVPRQ 642
L+G SS+G++ + WLWL + L+ +P +
Sbjct: 528 LQGTLPSSVGNLPSQLNWLWLRQNKLSGTIPSE 560
>02_02_0034 - 6246183-6246553,6246672-6249699
Length = 1132
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 740 LEGARGSSLGSVNQDVXWLWLXRXVLAXLVPRQ 642
L+G+ SS+G++ + WLWL + L+ +P +
Sbjct: 477 LKGSLPSSVGNLAPQLDWLWLKQNKLSGTIPAE 509
>02_02_0030 - 6207784-6208154,6208286-6211310
Length = 1131
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 740 LEGARGSSLGSVNQDVXWLWLXRXVLAXLVPRQ 642
L+G SS+G++ + WLWL + L+ +P +
Sbjct: 477 LQGTLPSSVGNLPSQLNWLWLRQNRLSGAIPSE 509
>02_02_0025 + 6183328-6186127,6186265-6186623
Length = 1052
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 740 LEGARGSSLGSVNQDVXWLWLXRXVLAXLVP 648
L+G SS+G++ ++ WLWL + L+ +P
Sbjct: 402 LQGHLPSSVGNLPSELKWLWLKQNKLSGTIP 432
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 527 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 423
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>02_02_0035 - 6253446-6255473
Length = 675
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 740 LEGARGSSLGSVNQDVXWLWLXRXVLAXLVPRQ 642
LEG+ SS+G++ + WLWL + + +P +
Sbjct: 477 LEGSLPSSVGNLAPQLEWLWLKQNKIYGTIPSE 509
>03_01_0501 + 3776369-3777337
Length = 322
Score = 28.7 bits (61), Expect = 7.0
Identities = 18/68 (26%), Positives = 26/68 (38%)
Frame = +1
Query: 577 QHCYQTCASQTRSTRXQGSKSCCRGTSXARTXRXSHNQXTSWLTEPKDEPRAPSSRPXEX 756
+H + C S R Q + C G + R + S L K PRA + P
Sbjct: 10 RHDLRHCPSPLALPRCQSFPARCAGDAGVHVVRLTSTTLGS-LEVDKGAPRAAEAPPMRR 68
Query: 757 XLPRAPXL 780
+PR P +
Sbjct: 69 MVPRTPTM 76
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 524 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 619
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>08_01_0346 - 3063440-3064189
Length = 249
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 377 AESLRYXLIGGLAVRRACYGVLR 445
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,693,044
Number of Sequences: 37544
Number of extensions: 342505
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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