Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O17
         (932 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   257   9e-69

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  257 bits (629), Expect = 9e-69
 Identities = 127/171 (74%), Positives = 138/171 (80%)
 Frame = +2

Query: 116 GVFXAXLNXFLTXXLAEXGXSGVXVRVTPIRSEXIIMATRXQXVLGXXGRXIRELTSVVX 295
           G+F A LN FL   LAE G SGV VR TP R+E IIMATR Q VLG  GR I+ELTSVV 
Sbjct: 17  GIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQ 76

Query: 296 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYXLIGGLAVRRACYGVLRFIMESGARGC 475
           KRF   E SVELYAEKV+ RGLCA+AQ ESLRY L+GGLAVRRACYGVLRFIMESGA+G 
Sbjct: 77  KRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGV 136

Query: 476 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGXK 628
           EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+  A RHV LRQGV+G K
Sbjct: 137 EVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIK 187



 Score = 33.9 bits (74), Expect = 0.17
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 627 RXKIMLPWDQXGXNGPXKPQPXHILVNRAQGRAPCPLEP 743
           + KIMLP+D  G NGP    P H+ +   Q     P EP
Sbjct: 187 KVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEV-LPKEP 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,685,331
Number of Sequences: 27780
Number of extensions: 264221
Number of successful extensions: 638
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)