Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O15
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0513 - 16681227-16683936,16685572-16685966                       29   4.8  
04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964...    29   6.4  

>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 272  QQGLLHKHESLRKFHDDVXGRIPSQEFGILDLL 370
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>04_04_1451 +
           33695734-33695806,33695946-33696179,33696341-33696434,
           33696532-33696749,33696859-33696992,33697098-33697325,
           33697417-33697845
          Length = 469

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +2

Query: 413 LLCQRF*XFLQNSMLRQSLHEPGNVLIRLLHSYYPALR-HRQLRSTWLHTKLILNILSTW 589
           ++C  F  ++   +L      PG+  ++  +SY  A+R H   + TWL    +L  L+ +
Sbjct: 62  MVCFAFVTYISAFLLSHCYRSPGSEKMQRNYSYMDAVRVHLGRKHTWLCG--LLQYLNLY 119

Query: 590 KLXIKWT-TLR*WMVALNEXICY 655
            + I +T T    M A+    CY
Sbjct: 120 GIGIAYTITTATCMRAIKRANCY 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,093
Number of Sequences: 37544
Number of extensions: 281392
Number of successful extensions: 569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)