Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O13
         (948 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0790 + 28083116-28083337,28083446-28083652,28083739-280838...    47   2e-05
01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44...    44   2e-04

>04_04_0790 +
           28083116-28083337,28083446-28083652,28083739-28083809,
           28083898-28084063,28084189-28084788,28084928-28085323
          Length = 553

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 247 RLTXLWNYPKYSCPFRKGXXYFXFKTPGLQNXNALYVPXXSGPG-NPGFXXDP 402
           +LT L+++P+Y  PF++   YF    PGLQ  +ALYV    G G  P    DP
Sbjct: 37  QLTALFDHPRYRAPFKRAGSYFYLHNPGLQPHSALYVQHGLGGGEEPDVLLDP 89


>01_01_0058 +
           440328-440437,440514-440733,441605-441805,441915-441985,
           442058-442217,444166-444492,444529-444759,444869-445249,
           445573-445648,445736-445799,446334-446469,447666-447710,
           447851-447916
          Length = 695

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 25/51 (49%)
 Frame = +3

Query: 93  TVVDXXHGTKXKXPYRWLEXPDSNXTXEFVEAXNKXTRPYLDACPCRNRSR 245
           +VVD  HG     PYRWLE P+S  T EFV +  +     L  C  R   R
Sbjct: 21  SVVDMYHGVPVADPYRWLEDPESEDTKEFVASQVELAESVLAGCFDRENLR 71



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +1

Query: 250 LTXLWNYPKYSCPFRKGXXYFXFKTPGLQNXNALYV 357
           +T L+++P++  PFR+G  YF F   GLQ  + LYV
Sbjct: 74  VTRLFDHPRHGAPFRRGNKYFYFHNSGLQAQSVLYV 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,851,973
Number of Sequences: 37544
Number of extensions: 172406
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)