Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O10
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    32   0.097
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    30   0.52 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.6  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    26   8.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   8.4  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +2

Query: 197 PASAGPEPRRSPAPDRRPLSAEEPRTLAARKAYPEEPRSPKPDVSDEA 340
           P  + P    SP P  +P SA  P T       P  P  P P V D+A
Sbjct: 156 PTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQA 203


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 514 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIP 663
           VP   PSP  P+ +   R    + QQDW   P      +W+ +P+  TIP
Sbjct: 222 VPRGPPSPPPPVLHSPPRKVSAQEQQDWQIPPS---ISNWK-NPKGYTIP 267


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 194  RPASAGPEPRRSPAPDRRPLSAEEPRTLAARKAYPEEPRSPKPDV-SDEAP 343
            RP SA P    +P P   P+S   P +     A P  P +P P + +  AP
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP--PSAPPPPLPASSAP 1741



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +2

Query: 197  PASAGPEPRRSPAPDRRPLSAEEPRTLAARKAYPEEPRSPKPDVSDEA 340
            P++       +P P + PL  +  +        P  P SPKP + D +
Sbjct: 1326 PSTTSTSFNTAPIPQQAPLENQFSKMSLEPPVRPAVPTSPKPQIPDSS 1373


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/51 (27%), Positives = 18/51 (35%)
 Frame = +2

Query: 194  RPASAGPEPRRSPAPDRRPLSAEEPRTLAARKAYPEEPRSPKPDVSDEAPL 346
            RPA+ GP P    A  +           A    Y + P S  P   +  PL
Sbjct: 1573 RPATVGPGPFGKVASQKNLTVQTNTNNAAMESFYSDRPTSSGPSYQNRTPL 1623


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 194 RPASAGPEP-RRSPAPDRRPLSAEEPRTLAARKAYPEEPRSPKP 322
           R  SA P P R +PA      +A  PRT+A   A     ++P P
Sbjct: 3   RRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPP 46


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 178 HVYSNTEHHNHKSTVSYVRQRASERACN 95
           HVYS     NHK+ V +  Q   +++ N
Sbjct: 86  HVYSQNVELNHKTQVDFTEQLIPKKSLN 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,444
Number of Sequences: 5004
Number of extensions: 56191
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)