Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O05
         (1144 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   4.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.6  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    29   6.1  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    29   8.1  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +3

Query: 1047 RPLXTDPSPXXRDPXPPPS--XXRPXXAPPPP 1136
            RP  T PSP  R P  PPS     P   PP P
Sbjct: 159  RPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSP 190


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical protein
            C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 1050 PLXTDPSPXXRDPXPPPSXXRPXXAPPPP 1136
            P+   P    R P PP S   P   PPPP
Sbjct: 276  PMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
            (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 1065 PSPXXRDPXPPPSXXRPXXAPPPPTH 1142
            P+P  + P PPP    P   PPPP H
Sbjct: 125  PAPYQQQPPPPPP---PPHYPPPPPH 147


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA binding
            protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 1050 PLXTDPSPXXRDPXPPPSXXRPXXAPPPP 1136
            P+   P    R P PP S   P   PPPP
Sbjct: 286  PMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 1080 RDPXPPPSXXRPXXAPPPPTH 1142
            + P PPPS   P  APPPP H
Sbjct: 18   KQPPPPPS---PRRAPPPPPH 35


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical protein
            R102.6 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 1053 LXTDPSPXXRDPXPPPSXXRPXXAPPPP 1136
            L   PSP    P PPP    P   PPPP
Sbjct: 242  LPPPPSPVCM-PPPPPPCPMPIPCPPPP 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,924,013
Number of Sequences: 27780
Number of extensions: 92461
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3099034026
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)