Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_O04
(1137 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.13
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.39
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.52
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.91
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.91
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.13
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +2
Query: 971 PXTLPLPXPXPXSSPPRXXXVAHPPPPXSSGXXPRTXXSPXPXV 1102
P P P P P +P PPPP +G P P P V
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 31.9 bits (69), Expect = 0.17
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +2
Query: 980 LPLPXPXPXSSPPRXXXVAHPPPPXSSGXXPRTXXSPXPXVPP 1108
+P P P P PP + PPPP P P PP
Sbjct: 741 VPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.39
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Frame = +1
Query: 736 PSXSS*XPCPLXAPSARXPXSXP---XPXPPPFXVXCTPXLXTRPXLXGQXPXPTXHRSA 906
P+ +S P P PS+R P P P PPP + + P + P A
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPA 283
Query: 907 PQLSRRXXXPAPRPXXSXPXRATHPSXPXP 996
+ + P P S A + P P
Sbjct: 284 INSTSKPPLPPPSSRVSAAALAANKKRPPP 313
Score = 30.3 bits (65), Expect = 0.52
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Frame = +1
Query: 736 PSXSS*XPCPLXAPSARXPXSXPXPXPPPFX-VXCTPXLXT--RPXLXGQXPXPTXHRSA 906
PS S+ P P+ PS S P P P V P + + +P L P P+ SA
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPL----PPPSSRVSA 301
Query: 907 PQLSRRXXXPAPRPXXSXPXRATHP 981
L+ P P P S R P
Sbjct: 302 AALAANKKRPPPPPPPSRRNRGKPP 326
Score = 29.9 bits (64), Expect = 0.69
Identities = 30/107 (28%), Positives = 37/107 (34%), Gaps = 1/107 (0%)
Frame = +2
Query: 809 PXLPXSPFXARRXFXPAPXXAA-SXXXPPXTEARLSXAXASXLPXLDHXHHXRXAPXTLP 985
P P P R P ++ S PP R + A + LP R AP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP-----QGRSAP---- 361
Query: 986 LPXPXPXSSPPRXXXVAHPPPPXSSGXXPRTXXSPXPXVPPLXXPPL 1126
P P P S+P PPP SS +P P +P P L
Sbjct: 362 -PPPPPRSAPS----TGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL 403
Score = 29.5 bits (63), Expect = 0.91
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 1/108 (0%)
Frame = +2
Query: 803 PXPXLPXSPFXARRXFXPAPXXAASXXXPPXTEARLSXAXASXLPXLDHXHHXRXAPXTL 982
P P P P + P + + P T L + LP AP
Sbjct: 389 PAPP-PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 983 PLPXPXPXSSP-PRXXXVAHPPPPXSSGXXPRTXXSPXPXVPPLXXPP 1123
PLP P + P P A P PP + P +P V + P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 983 PLPXPXPXSSPP-RXXXVAHPPPPXSSGXXPRTXXSPXPXVPPLXXPPLT 1129
P+P P S PP R ++ P PP T SP P PP P++
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSP-PNSPPRPIAPVS 279
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.52
Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 5/109 (4%)
Frame = +2
Query: 809 PXLPXSPFXARRXFXPAPXX--AASXXXPPXTEARLSXAXASXLPXLDHXHHXRXAPXTL 982
P LP S + P +A P T A +P L P
Sbjct: 971 PPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSAD 1030
Query: 983 PLPXPXPXSSPPRXXXVAHPPPPXSSGXXPRT---XXSPXPXVPPLXXP 1120
P P P ++PP + PP P SS P +P +P + P
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Score = 29.9 bits (64), Expect = 0.69
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +2
Query: 971 PXTLPLPXPXPXSSPP-RXXXVAHPPPPXSSGXXPRTXXSPXPXVPPLXXP 1120
P P P P +PP VA PP P S P P VPP+ P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP-PVPKPAAGVPPVPPP 1194
Score = 29.5 bits (63), Expect = 0.91
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +2
Query: 983 PLPXPXPXSSPPRXXXVAHPPPPXSSGXXPRTXXS-PXPXVP-PLXXPPL 1126
P+P P + P VA PP P SG P S P VP P PP+
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = +2
Query: 983 PLPXPXPXSSP-PRXXXVAHP-PPPXSSGXXPRTXXSPXPXVPPLXXPPL 1126
P+P P P P+ P PPP + P+ P PP PP+
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Frame = +2
Query: 971 PXTLPLPXPXPXSSPP-RXXXVAHPPPPXSSGXXPRTXXS--------PXPXVPPLXXP 1120
P P P P +PP VA PP P SG P S P +PP+ P
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.91
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +2
Query: 989 PXPXPXSSPPRXXXVAHPPPPXSSGXXPRTXXSPXPXVPPLXXPP 1123
P P S+ P PPPP S P P P PP PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMS-VPPPPSAPPMPAGPPSAPPP 1733
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Frame = +1
Query: 763 PLXAPSARXPX-SXPXPXPPPFXVXCTPXLXTRP-XLXGQXPXPTXHRSAPQL 915
P+ SA P S P P PPP V P P P P SAP +
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSV 1743
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.91
Identities = 29/108 (26%), Positives = 32/108 (29%), Gaps = 1/108 (0%)
Frame = +2
Query: 803 PXPXLPXSPFXARRXFXPAPXXAASXXXPPXTEARLSXAXASXLPXLDHXHHXRXAPXTL 982
P P P S P P S P A + A +P AP
Sbjct: 128 PAPPTPQSELRPPTSAPPRP----SIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 983 PLPXPX-PXSSPPRXXXVAHPPPPXSSGXXPRTXXSPXPXVPPLXXPP 1123
P P P + PP V PPPP S T P PP P
Sbjct: 184 PPSAPSLPSAVPPMPPKV--PPPPLSQAPVANTSSRPSSFAPPAGHAP 229
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = +2
Query: 968 APXTLPLPXPXPXSSPPRXXXVAHPPPPXSSGXXPRTXXSPXPXVPPLXXPPLT 1129
AP P P S PP A P S+ P P VPP PPL+
Sbjct: 157 APPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP---PPLS 207
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 977 TLPLPXPXPXSSPPRXXXVAHPPPPXSSG 1063
+LP P P PP + PPPP G
Sbjct: 3 SLPPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,619
Number of Sequences: 5004
Number of extensions: 19356
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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