Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_O03
(866 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82288-3|CAB05320.2| 484|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ... 29 4.3
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical... 29 4.3
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z70686-10|CAD21656.1| 533|Caenorhabditis elegans Hypothetical p... 28 7.5
Z70683-8|CAD21626.1| 533|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z92838-2|CAB07408.1| 211|Caenorhabditis elegans Hypothetical pr... 28 9.9
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 9.9
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 9.9
>Z82288-3|CAB05320.2| 484|Caenorhabditis elegans Hypothetical
protein ZK896.5 protein.
Length = 484
Score = 29.5 bits (63), Expect = 3.3
Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 10/157 (6%)
Frame = +3
Query: 285 YTNMKAYENFMMMYKVGFLPKNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKT-ACYA 461
YTN+ ++++ +Y +P S+ AI +LF+ + T + Y
Sbjct: 245 YTNVNQFKSYQAVYCT--IPDACPVSLDATNGTAAAIHFNELFFVKQLSMATNNTMSVYT 302
Query: 462 RVYMNQGM---FLYAYYIAIIQRSDTASFVLPAPYEAYPQYFVNMEVXNXMDYVKMMDGC 632
+ N + Y+ Y+ I + +F + + + N D+ +DG
Sbjct: 303 NYFSNSNKLADYTYSNYLTSIPQKFPGTFTTFVLDNDHASFQLASTALNA-DWSSAVDGR 361
Query: 633 LDEXICYNYGIIKXNEQF------VMYANYSNSLDLP 725
NYGII N+ F V Y+N S ++D P
Sbjct: 362 RGFFSSANYGIINSNQDFDDQVTAVKYSNISYTVDRP 398
>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -1
Query: 611 VVHXIXNFHVDKILRISFVWSR*NEAGGVRALDNSYVVGV*EHSLV 474
++H + N+ ++ +RI FV EAG ++ L + VV V E+ ++
Sbjct: 743 IIHRLDNYSIETRVRIMFVMGVPVEAGFLKNLRKTAVVRVDENQMI 788
>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -1
Query: 611 VVHXIXNFHVDKILRISFVWSR*NEAGGVRALDNSYVVGV*EHSLV 474
++H + N+ ++ +RI FV EAG ++ L + VV V E+ ++
Sbjct: 743 IIHRLDNYSIETRVRIMFVMGVPVEAGFLKNLRKTAVVRVDENQMI 788
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 545 TCSIRSLSSIFCQHGSXKXNGL-R*DDGW 628
TCS+ S C HG NGL + +DGW
Sbjct: 853 TCSVTSCIDSQCTHGHCGTNGLCKCEDGW 881
>Z70686-10|CAD21656.1| 533|Caenorhabditis elegans Hypothetical
protein F13B12.6 protein.
Length = 533
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 431 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 294
+I+G RDG F HF V K +E +Q LG ++ V H E+F V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471
>Z70683-8|CAD21626.1| 533|Caenorhabditis elegans Hypothetical
protein F13B12.6 protein.
Length = 533
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 431 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 294
+I+G RDG F HF V K +E +Q LG ++ V H E+F V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471
>Z92838-2|CAB07408.1| 211|Caenorhabditis elegans Hypothetical
protein T03D8.3 protein.
Length = 211
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 305 VGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEK 198
V F V VA + GLD+E GDFV+ S D ++++ +
Sbjct: 8 VFFTVGVAAIYGLDLENAGDFVLPS--GDFIDLISR 41
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 345 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 479
KN+ ++M +EAI LF+ FE +YK R+++ +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 345 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 479
KN+ ++M +EAI LF+ FE +YK R+++ +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,086
Number of Sequences: 27780
Number of extensions: 319997
Number of successful extensions: 855
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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