Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_O02
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    61   1e-09
AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical ...    59   4e-09
AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical ...    56   3e-08
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    31   1.4  
AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   5.8  
AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    28   7.7  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    28   7.7  

>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 40/126 (31%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
 Frame = +3

Query: 213 VTEVCLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKPTIN-GLSPDAPDA 377
           V+  CL CIC   SGCK  + C  +    +CG ++I  GY+ D G+PT   G + +A  A
Sbjct: 16  VSADCLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEA--A 72

Query: 378 YSSCTVDPYXAAQTVQNYMXXFGQXCXGDGVVNCYDYMAIHKKGGYGCTGELPFNYVXVF 557
           +  C  D   A   V+NY   +   C G G+  C      H  G  GC       Y    
Sbjct: 73  WKRCADDLNCATTCVENYYNRYKSQCNGLGMGACQIMSRNHNGGPRGCHNANTLAYWNGV 132

Query: 558 NQCXQC 575
             C  C
Sbjct: 133 KSCCGC 138


>AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.3 protein.
          Length = 139

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
 Frame = +3

Query: 225 CLGCICQAISGCKQ---GLQCEGETCGLFRITWGYWADAGKPTI-NGLSPDAPDAYSSCT 392
           CL CIC   SGCK     +     +CG ++I   Y+ D G+PT  +G + +A  A+  C 
Sbjct: 20  CLHCICMRESGCKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEA--AWKRCA 77

Query: 393 VDPYXAAQTVQNYMXXFGQXCXGDGVVNCYDYMAIHKKGGYGCTGELPFNYVXVFNQCXQ 572
            D   A   V+NY   +   C G G   C      H  G  GC       Y      C  
Sbjct: 78  NDLSCATTCVENYYNRYKSQCAGTGQGACEVMARNHNGGPQGCKHSGTLGYWNGIKSCCG 137

Query: 573 C 575
           C
Sbjct: 138 C 138


>AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.2 protein.
          Length = 139

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
 Frame = +3

Query: 225 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKP-TINGLSPDAPDAYSSC 389
           CL CIC   SGCK  + C  +    +CG ++I   Y+ D G+P   +G S +   A+  C
Sbjct: 20  CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYYEDCGQPGKKHGESTEV--AWKRC 76

Query: 390 TVDPYXAAQTVQNYMXXFGQXCXGDGVVNCYDYMAIHKKGGYGCTGELPFNYVXVFNQCX 569
             D   A   V+NY   +   C G G   C      H  G  GC       Y    + C 
Sbjct: 77  ADDLKCATNCVENYYNRYKHECAGTGQGACEVMARNHNGGPRGCHASGTLGYWKGVHSCC 136

Query: 570 QC 575
            C
Sbjct: 137 GC 138


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 791 PPXYXFSSPXTXPPPXPXPLXXXPPXPXP 877
           PP +    P   PPP P P    PP P P
Sbjct: 52  PPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80


>AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical
           protein C45G7.1 protein.
          Length = 145

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
 Frame = +3

Query: 273 QCEGETC-GLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDPYXAAQTVQNYMXXFGQ 449
           QC    C G F I   Y+ D G+P           A+  C  D   A   + NY   +  
Sbjct: 20  QCMHCMCLGNFVIKLPYYIDCGEPG-KQRGESTESAWKRCADDLDCAETCMMNYYHRYKS 78

Query: 450 XCXGDGVVNC 479
            C G G+  C
Sbjct: 79  QCNGLGMSEC 88


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 868 GGGXXXEGXGXGGGXCGG 815
           GGG    G G GGG CGG
Sbjct: 87  GGGCGGGGCGGGGGGCGG 104


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 791 PPXYXFSSPXTXPPPXPXPLXXXPPXPXP 877
           PP     S    PPP P P+   PP P P
Sbjct: 566 PPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594


>AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical
           protein Y54E2A.8 protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 800 YXFSSPXTXPPPXPXPLXXXPPXPXP 877
           + F  P   P P P P+   PP P P
Sbjct: 148 FFFDQPPPTPIPTPVPILEPPPPPPP 173


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = +2

Query: 791 PPXYXFSSPX---TXPPPXPXPLXXXPPXP 871
           PP    S+P    T PPP P P    PP P
Sbjct: 77  PPPLPLSNPPAKPTPPPPPPKPTIRPPPIP 106


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = +2

Query: 791 PPXYXFSSPX---TXPPPXPXPLXXXPPXP 871
           PP    S+P    T PPP P P    PP P
Sbjct: 299 PPPLPLSNPPAKPTPPPPPPKPTIRPPPIP 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,666
Number of Sequences: 27780
Number of extensions: 348819
Number of successful extensions: 1633
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)