Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_O01
(914 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.92
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 1.2
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 2.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 23 5.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.5
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 26 6.5
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 6.5
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 8.6
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.92
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +3
Query: 786 PPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSPPXXPXXPP 908
P PP + T P P PP P P+ P PP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 188 PSQHLKACQDMVDIPTKSKVTLDCIPARDRMECLNYVQQRXADFVPVD 331
P L+A Q+++D S++ I + ++ YVQ++ DF PVD
Sbjct: 230 PGNKLEAIQNVIDSLHISRIE---IRTENSIDISQYVQKKEVDFFPVD 274
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 312 PISFQLTPKTCTWPPKYPIRTSSFSRSTEPMKN 410
P+ Q P+ +PP YPI S+ T P N
Sbjct: 736 PVVSQQQPQPYAFPPMYPIPYVSYGYGTMPYNN 768
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 802 PPPXPXXXXXXXXXXPXXPXXXXSXLPXPPXPP 900
PPP P P S LP PP PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.0 bits (47), Expect(2) = 5.7
Identities = 12/41 (29%), Positives = 14/41 (34%)
Frame = +3
Query: 783 GPPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSPPXXPXXP 905
G P PP + P P P P P+P P P
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPA---PSGAPPVPAPSGIPPVP 1095
Score = 21.4 bits (43), Expect(2) = 5.7
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 606 TTXXXPCPXSSPNLASXVXGLPIXPP 683
T P P S+P + G P PP
Sbjct: 1039 TAPPVPIPTSTPPVPKSSSGAPSAPP 1064
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 840 PXXPXPPXXPXXPSPPXXPXXPP 908
P P PP P PP P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 6.5
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 189 HHNT*KRVRTWWIFRPNPRSH*TAFPPEIEWSV*ITFSRGXPISFQLTPKTCTWPPKYPI 368
HH T WWI+ +PR + PP + T R I FQ+ P T+ + I
Sbjct: 479 HHKT-----AWWIYVVDPRQNRVIVPPFSITDIPKTL-RTFRIPFQVPPVAGTFSFQLHI 532
Query: 369 RTSSF 383
++S+
Sbjct: 533 MSNSY 537
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 312 PISFQLTPKTCTWPPKYPIRTSSFSRSTEPMKNRMRLSVTKQXL 443
P + LT TC PI+++ ++ E + N ++S Q +
Sbjct: 266 PSGYPLTSSTCVSSISQPIQSTDCQKAQENLSNNKQMSSNDQDI 309
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 351 PPKYPIRTSSFSRSTEPMKN 410
PPK P+R S RS+ P++N
Sbjct: 306 PPKPPLRKVSTQRSSSPIEN 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,983
Number of Sequences: 5004
Number of extensions: 49603
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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