Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_O01
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical pr... 33 0.28
AC024805-15|AAK39331.2| 344|Caenorhabditis elegans Hypothetical... 31 1.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.5
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.0
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 30 2.7
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 30 2.7
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 3.5
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 3.5
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 29 4.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.6
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.6
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 29 6.1
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.1
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 28 8.1
>Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical
protein Y48E1B.3 protein.
Length = 360
Score = 33.1 bits (72), Expect = 0.28
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 175 ICSFRCVHTCTNQGYQK*NILEPLSRATRQALLND 71
+C FR H+C N GY + N+ + S A+L D
Sbjct: 97 VCGFRGSHSCENSGYDEANLAQTYSALLSLAILGD 131
>AC024805-15|AAK39331.2| 344|Caenorhabditis elegans Hypothetical
protein Y51H7C.13 protein.
Length = 344
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +3
Query: 786 PPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSP-PXXP 896
PP PP TT T P P PP P+P P P
Sbjct: 132 PPPCIPPTTTTTTTTTTRPPCPYPPATNTPPAPEPTLP 169
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Frame = +3
Query: 774 AXXGPPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPS--PPXXPXXP 905
A P PP RT P P PP P P PP P P
Sbjct: 133 AGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSP 178
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +3
Query: 786 PPXXXPPXT--TXRTXXPXXPXXPXPPXXPXXPSPPXXPXXP 905
PP PP T + + P P P P P P P P P
Sbjct: 155 PPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = +3
Query: 786 PPXXXPPXTTXRTXXPXXPXX-PXPPXXPXXPSPPXXPXXPP 908
PP PP P P PP P P PP P PP
Sbjct: 35 PPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPP 76
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 783 GPPXXXPPXTTXRTXXPXXPXXPXPPXXPXX-PSPPXXPXXPP 908
GPP PP P P P P P P PP P PP
Sbjct: 26 GPPPCPPPPPPM-CAPPPLPCPPPPICPPQFCPPPPMCPPPPP 67
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +3
Query: 783 GPPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPS--PPXXPXXPP 908
G P PP P P PP P P+ PP P PP
Sbjct: 67 GRPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPP 110
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +3
Query: 786 PPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSPPXXPXXPP 908
PP PP + P P P PP P PP PP
Sbjct: 73 PPLPPPPLPL--SNPPAKPTPPPPPPKPTIRPPPIPASPPP 111
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +3
Query: 783 GPPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPS--PPXXPXXPP 908
G P PP P P PP P P+ PP P PP
Sbjct: 289 GRPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPP 332
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +3
Query: 786 PPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSPPXXPXXPP 908
PP PP + P P P PP P PP PP
Sbjct: 295 PPLPPPPLPL--SNPPAKPTPPPPPPKPTIRPPPIPASPPP 333
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 789 PXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSPPXXPXXP 905
P PP P P P PP P P PP P P
Sbjct: 52 PVCPPPPPCPAQFCPPPPICP-PPPPPPMPCPPPPPPMP 89
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 786 PPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSPP 887
PP PP + P P P PP P PP
Sbjct: 69 PPPPPPPLISILQQAPPPPPPPPPPTLKAPPPPP 102
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +3
Query: 789 PXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSPPXXP 896
P PP + P P PP P P PP P
Sbjct: 114 PVQPPPPVQYQNQGPQYIEAPPPPPSPPPPPPPPPP 149
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +1
Query: 802 PPPXPXXXXXXXXXXPXXPXXXXSXLPXPPXPPXP 906
PPP P P P P PP PP P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +1
Query: 802 PPPXPXXXXXXXXXXPXXPXXXXSXLPXPPXPPXP 906
PPP P P P P PP PP P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +1
Query: 802 PPPXPXXXXXXXXXXPXXPXXXXSXLPXPPXPPXP 906
PPP P P P P PP PP P
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 810 TTXRTXXPXXPXXPXPPXXPXXPSPPXXPXXPP 908
+T R+ P P P PP P P P PP
Sbjct: 1329 STSRSSSPSPPPPPPPPPPPSDDLTPVPPPPPP 1361
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Frame = +3
Query: 786 PPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPS--PPXXPXXPPXF 914
PP PP P P P PP P+ P P PP F
Sbjct: 1339 PPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLF 1383
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 783 GPPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSPPXXPXXPP 908
GPP PP R P P PP P P P PP
Sbjct: 131 GPPQHFPPGPP-RPHFPGPPGPHRPPEHYPGPPRPQAPAAPP 171
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = -3
Query: 906 GGGXGXXXGKGXXXXXGXXGXXGXXXXXXGGXWXGXGXXGG 784
GGG G G+G G G G GG G G G
Sbjct: 31 GGGGGYSGGRGGGYGGGGGGGYGGGGYGGGGRGGGRGGSNG 71
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = +3
Query: 786 PPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSPPXXPXXPP 908
PP PP + P P P P PS P PP
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPP 301
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = +3
Query: 786 PPXXXPPXTTXRTXXPXXPXXPXPPXXPXXPSPPXXPXXPP 908
PP PP + P P P P PS P PP
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPP 311
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = -3
Query: 906 GGGXGXXXGKGXXXXXGXXGXXGXXXXXXG--GXWXGXGXXG 787
GGG G G+G G G G G G W G G G
Sbjct: 54 GGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGG 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,016,830
Number of Sequences: 27780
Number of extensions: 337774
Number of successful extensions: 1734
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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