Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_N23
         (1045 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.48 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.48
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = -3

Query: 419 PPPXGGPXXPAPGDGXPXHXPPXPXXRGXGPPRSGXVXXPGPPR 288
           PP  G P  P P        PP P   G  P         GP R
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIR 453



 Score = 25.4 bits (53), Expect = 0.85
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 472 GGPPRPGXAXXXGGXPXPPP 413
           G PP P      GG P  PP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 1.1
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = -3

Query: 401 PXXPAPGDGXPXHXPPXPXXRGXGPPRSGXVXXPGPPRLXP 279
           P   APG     H  P    RG  P  S      GPP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 2.0
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +3

Query: 360 PVXGXPVPXGGXGRXPXGGGGXGXPPXXXAXPGRGGPPPXXP 485
           P  G P P     + P      G PP     P  GGPP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQ-RGSPPNPSQGPPPGGPPGAPP 56


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 36  LKIYYYYMFISNVIN 80
           L IYYY   +S+V+N
Sbjct: 226 LIIYYYSQIVSHVVN 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,305
Number of Sequences: 438
Number of extensions: 4538
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34704288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)