Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_N19
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   4.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   7.9  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -2

Query: 473 DCLVNSITMSPTICKSAFVFSSTVLALVSIWKSDICWFFRPVMFKFLKRITTPASFG-AI 297
           + L N + + P +  S    SSTVL   + W + I  F   +    L  + T A+FG AI
Sbjct: 351 ELLFNPMELFPQVINSCSPSSSTVLCETTFWVTAIVLFTSAL----LGLLLTSATFGAAI 406

Query: 296 TSNDVTTSGSIG 261
            +  +  S +IG
Sbjct: 407 PTGIIVPSLAIG 418


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +3

Query: 510 CHWSCQYGYNL-KNDDNGVQHFEVQPETFTCESIGEPKVTLS-SDLNSALEKDSGTNSLD 683
           CHW  ++GY L  ND N ++   ++ +     +   PK+  S S+L+    K   T S D
Sbjct: 191 CHWGRRFGYTLYLNDTNQLEDAVLKYKRRGGPT--SPKIYESISNLDHIGMKIIETKSSD 248

Query: 684 PDTEPLKTLRQAAIC 728
             +E LKT  Q  IC
Sbjct: 249 DFSEYLKT-TQNTIC 262


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 579 QPETFTCESIGEPKVTLSSDLNSALEK 659
           +P+TF C+S  EP   ++S L    EK
Sbjct: 684 EPQTFNCDSFNEPGTEITSFLYDFDEK 710


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/38 (23%), Positives = 25/38 (65%)
 Frame = +1

Query: 469 QSKSFTGLYTADTNVIGAVSTATI*KMMITEFNILKSS 582
           +S   T   T+ +NV+ ++ST+++    ++ +++++SS
Sbjct: 356 ESSIATSPITSSSNVVSSISTSSMDSSAVSSYSVVQSS 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,658
Number of Sequences: 5004
Number of extensions: 58091
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)