Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_N15
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.48 
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    28   1.5  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   1.5  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    28   1.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    28   1.9  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +3

Query: 243 TINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGA 422
           TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR    +   IVG 
Sbjct: 730 TIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGN 789

Query: 423 GLMLMLIATPDN 458
            ++   + TP+N
Sbjct: 790 SVVARTVYTPNN 801


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 85  ICLFYL*LVKLEYCCCVILKAINIL 159
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLI 152


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 85  ICLFYL*LVKLEYCCCVILKAINIL 159
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFILLLLGLIYCSKIVVKAIPLI 152


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 85  ICLFYL*LVKLEYCCCVILKAINIL 159
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLI 152


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -2

Query: 719 INRLTKVISDIDVN--SVINVPPRNSQLPRSASIAAXREAYKYQGSAEQSSYYDRWVNYT 546
           ++ +T + S++DV+  S IN   +N  +P S+  +   +      + E  S +  W++YT
Sbjct: 279 LSPMTPLSSELDVSAFSEINSKIKNVDVPASSYSSPISKVSPSDVTEEDGSLFFFWMDYT 338

Query: 545 DIF 537
           +++
Sbjct: 339 EMY 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,850
Number of Sequences: 5004
Number of extensions: 63782
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)