Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_N15
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    65   8e-11
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237     31   0.89 
03_01_0560 + 4162206-4162607                                           30   2.0  
12_02_1017 + 25339515-25339548,25339689-25339837,25339932-253399...    29   6.2  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    29   6.2  
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    29   6.2  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 36/111 (32%), Positives = 58/111 (52%)
 Frame = +3

Query: 282 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNG 461
           ++ P V+ HLK VY TL +   +++ G Y+ +      G L+ +   G +  L + P   
Sbjct: 28  QISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVPVFE 86

Query: 462 KNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFS 614
           +    R G LL   L  G S+GPL++     D SI++TA +GT + F CF+
Sbjct: 87  ERK--RFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFT 135


>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
          Length = 572

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 393 AGFLSAIVGAGLMLMLIATPD-NGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSII 569
           AG LS++  AG  L + ++       T+  +G ++GFG+  G         ++ V  S +
Sbjct: 222 AGLLSSLAAAGTWLQVASSYGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWV 281

Query: 570 ITALLGTTLVFVCF 611
           I+ L+G  + F+ +
Sbjct: 282 ISPLMGAAVSFIVY 295


>03_01_0560 + 4162206-4162607
          Length = 133

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 378 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 527
           F  F  G   A+  A L L+L+A  D     +   G+L G  LT   S+G
Sbjct: 58  FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107


>12_02_1017 +
           25339515-25339548,25339689-25339837,25339932-25339990,
           25340665-25340742,25341155-25341347,25341424-25341454,
           25341534-25341592,25341674-25341747,25342228-25342314,
           25342353-25342379,25342522-25342583,25342676-25342704,
           25343037-25343129
          Length = 324

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 731 KCDCINRLTKVISDIDVN-SVINVPPRNSQLPRSASIAAXREAYKYQGSAE 582
           KCD I+R      DID++ S+  V  R+    +   +AA R +Y  + +AE
Sbjct: 254 KCDIIDRAMSQFIDIDIDVSMQRVLQRHVATGKEPDVAAWRISYNDRPNAE 304


>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
            14794906-14794986,14795078-14795147,14795267-14795337,
            14795427-14795594,14796030-14796074,14796449-14796511,
            14796594-14796869,14797858-14797971,14798099-14798225,
            14798315-14798484,14798743-14798841,14799577-14799630,
            14801487-14801522,14801741-14801844,14801952-14802186,
            14802377-14802609,14802846-14803346,14803422-14803716,
            14805796-14805881,14806952-14807064,14807303-14807385,
            14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +3

Query: 459  GKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSXCCYAC*T 638
            G    +  G+++    T+  SM P L  V V++    I+ L G T      S  CY   T
Sbjct: 1171 GTECAIEPGFVIYCNKTADGSMKPFLINVEVLN----ISLLHGQTRALNALSTYCYNDVT 1226

Query: 639  RQLAIPRWHIDDTVHVY 689
            + +   RW +D +   Y
Sbjct: 1227 KSMESSRWSLDFSTWPY 1243


>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 240 NTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDM-FTRFQAGFLSAI 413
           N ++    + + +N+     +Q +K + A+L  TC S S   Y D+   R+    +SAI
Sbjct: 422 NNVHALDQLRTIKNKANSTSQQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKLISAI 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,852,892
Number of Sequences: 37544
Number of extensions: 395940
Number of successful extensions: 752
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)