Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_N15
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 299 NWWFQSILKAVDKGLKI 249
           NW  Q ++K+++KG ++
Sbjct: 841 NWSNQDVIKSIEKGYRL 857


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 592 VVPSRAVIMIDGSTTLTYSSR 530
           V+ +R V+  DGS T  YSS+
Sbjct: 574 VLYNRLVVSEDGSETFKYSSQ 594


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 592 VVPSRAVIMIDGSTTLTYSSR 530
           V+ +R V+  DGS T  YSS+
Sbjct: 574 VLYNRLVVSEDGSETFKYSSQ 594


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 577 AVIMIDGSTTLTYSSRGPMLMPDVNPNP 494
           A I++    T  Y++  P L   +NPNP
Sbjct: 198 APILVRARETPNYTACPPTLACPLNPNP 225


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 543 VSVVDPSIIITALLGTTLVFVCFSXCCYAC*T 638
           V ++ P+ ++  LLG  L+F         C T
Sbjct: 294 VEIIPPTSLVVPLLGKYLIFAMILVSISICVT 325


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 543 VSVVDPSIIITALLGTTLVFVCFSXCCYAC*T 638
           V ++ P+ ++  LLG  L+F         C T
Sbjct: 294 VEIIPPTSLVVPLLGKYLIFAMILVSISICVT 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,750
Number of Sequences: 438
Number of extensions: 4138
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)