Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_N14
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    27   3.2  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    27   4.3  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   7.5  

>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
 Frame = +3

Query: 81  DIIS--IKKQNSI*CVKFLILTVFEFSIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFL 254
           DII+  +  QNS    K   +     S  L  + ++SLP + +   +  S A  +    L
Sbjct: 65  DIIAPQLPSQNSEIIEKNSPVNKLNSSTSLTTHQLASLPKLEVTDHDNVSEAETV---VL 121

Query: 255 SDEENKK--VYGKCNNPNGHGHNYVV--LVTVKGPVDPQTGMVMNITDLKKYIKTAILEP 422
           +++E K+  + G  +     G +  +   + V   V+PQ     NIT +   +K +  E 
Sbjct: 122 NEDEEKETSLVGSVSVTEDLGDSSAIGRTILVNNSVEPQMENTANITIVSPSLKESDFES 181

Query: 423 LDHKXLDND 449
            +    DN+
Sbjct: 182 EEKATNDNN 190


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +3

Query: 216 TFSSAHRLHSPFLSDEENKKVYGKCNNPNGHG---HNYVVLVTVKGPVDPQTGMVMNITD 386
           +F ++ R+  P +S++  +++YG  N          N +  VT+    D        +T 
Sbjct: 42  SFMTSSRMDKPSMSNKPREQMYGLGNMTAVQEPIPENSLKTVTL----DQAQTAASTVTG 97

Query: 387 LKK-YIKTAILEPLDHKXLDNDVPYF 461
           L   Y+      PLD++ LD+ +P+F
Sbjct: 98  LHPIYMDFQATSPLDYRVLDSMLPFF 123


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +3

Query: 162 LLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNY 320
           L+NY  +  P  S  RRET    +  HS   S +E    Y    + +    +Y
Sbjct: 129 LMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFEDASSPQSSY 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,851
Number of Sequences: 5004
Number of extensions: 45849
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)