Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_N10
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    30   0.39 
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   3.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   3.6  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   4.8  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   6.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.4  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   8.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.4  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   8.4  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +2

Query: 428  GKPKNIDDANEDTIKRVCXDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 595
            G    ID++  +++KR    Y  ++  ++     LE  ++R + EISD  +++  L
Sbjct: 837  GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 437 KNIDDANEDTIKRVCXDYHERIARLEDEKFDLEYIVKRKD 556
           +NI D++ED I ++   Y +  A   DE+   E+ +  KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 488 YHERIARLEDEKFDLEYIVKRKDMEISDLNS---QVNDLRGXFXKPTLXKVSKYXNXFAX 658
           +H+ +   +DE     Y++  K ME  +L+    QVN +     K     VS + N +A 
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVW-NTYAQ 636

Query: 659 LQKTAAEFT 685
           L+  +  FT
Sbjct: 637 LEHLSGAFT 645


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 535 FQIEFFIFKTSDAFMVVXANPLNSIFVGVVNVLRFTAPLLD 413
           + +++ + K +   M V  +PL S F+  +N LRF   + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 306 KPFFAFLALEASSMRLRTSARLRSISACL 220
           K FF  L  E+  +RL+T+  + S+  CL
Sbjct: 325 KAFFTLLESESMEIRLQTATTICSVIGCL 353


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = +2

Query: 776  PXHPXVXXXXVPASPSXXPXSLPPSPPXXXXXLSPPXXPXXP 901
            P HP       P S +    S P  PP       PP  P  P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 458 EDTIKRVCXDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 589
           ED+ +    D+H   A  E+EK     + K   ME+ ++N  V+
Sbjct: 23  EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 818 PSXXPXSLPPSPPXXXXXLSPPXXP 892
           P   P SLPPS P      +PP  P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLP 440


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 488 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 586
           +HE I +L+D + +L   +++K++ IS L   V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,700
Number of Sequences: 5004
Number of extensions: 31383
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)