Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_N05
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   122   7e-29
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    27   3.7  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    27   3.7  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    26   8.6  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  122 bits (294), Expect = 7e-29
 Identities = 55/76 (72%), Positives = 65/76 (85%)
 Frame = +1

Query: 217 FLDIXLHVYDLGMXNRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFXLKKMWK 396
           ++DI L  YDLG+  RDKT+DQ+T+D A+AI K +VGIKCATITPDE RV+E+ LKKMWK
Sbjct: 44  YMDIKLDYYDLGIEARDKTNDQITVDAAKAILKNDVGIKCATITPDEARVKEYNLKKMWK 103

Query: 397 SPNGTIRNILGGTVFR 444
           SPNGTIRNIL GTVFR
Sbjct: 104 SPNGTIRNILNGTVFR 119



 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
 Frame = +2

Query: 452 IICKNIPRLVTGWDKPIIIGRXAHADQYKATDFVVPGAGTLXIXFKPESGEAIKXV--VX 625
           I+ KNIP+ + GW  PI IGR A  DQYK+TD V  G G L + F P+   + K    V 
Sbjct: 122 ILIKNIPKYIPGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVY 181

Query: 626 EYQGAXVALAMFXTXXXXXXXXXXXXXXXLDXKYPLYLXTXXT 754
           E+ G+ VA++M+ T               L  K PLYL T  T
Sbjct: 182 EFNGSGVAMSMYNTDDSIRGFAHSSFQMALQKKMPLYLSTKNT 224



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +3

Query: 99  SQTTNMSKINGWTVVVDIHCADEMTRIIWDLIKEKLILPIL 221
           + + +  KI     VV++   DEMTR+IW +I+EKL+LP +
Sbjct: 6   ASSKSFQKITVKNPVVEMD-GDEMTRVIWKIIREKLVLPYM 45


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 453 IAXPENSTTKNITDGPIRAFPHFLQXKFFNSLLIRSYGRTFDAHI 319
           I  PEN TT  ++ GP      F   +  +  L++  GRTF   I
Sbjct: 595 IVPPENITTILVSQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFI 639


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
 Frame = -3

Query: 637 TLVLXNYXFYCLTRFRFEXYXKSTSTWDNKVSCF--------VLISMSXTSNDDGFVPPC 482
           +L   +Y + C T F    + K  ++ +    CF        + I      +D GFV P 
Sbjct: 237 SLFAHHYSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPN 296

Query: 481 YKSRYILANNS 449
           Y   YIL N +
Sbjct: 297 YCISYILKNQN 307


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 250 GMXNRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEK 360
           GM   +K+      +  +++K+  VG+K    TP EK
Sbjct: 59  GMEKNNKSSGDALHEAIQSLKRNKVGLKGILFTPFEK 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,043
Number of Sequences: 5004
Number of extensions: 50381
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)