Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_N01
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    29   0.87 
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   6.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   8.1  

>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 158 IIGVSSQDDRYADWNNIYSRXLPPTNWPREVAP 256
           I+G+ +  DR  DWN+ Y+R +    W    AP
Sbjct: 254 IVGIEADPDR-PDWNDYYARRVQFCQWTIAAAP 285


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
 Frame = +2

Query: 188 YADWNNIYSRXLPPTNWPREVAP--DTERPYAVNQYGLYNRNDIP 316
           + DWN       PP  W  E+ P  DT   Y V+    Y+    P
Sbjct: 245 FPDWNKFIFHEYPPKPW-SEILPSVDTSIQYIVSHLVTYSNRASP 288


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = +2

Query: 179 DDRYADWNNIYSRXLPPTNWPREVAPDTERPYAVNQYGLYN 301
           +DRYADWN   S   P    PR      E P  V   G YN
Sbjct: 208 EDRYADWNFTNSWD-PDCELPRFWGESGE-PVVVEWTGCYN 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,500
Number of Sequences: 5004
Number of extensions: 50643
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)