Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_N01
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0625 - 26225201-26225879,26226706-26227553 33 0.23
06_01_0145 + 1092764-1093351 30 2.1
10_01_0274 - 2901033-2901778,2902475-2902634 30 2.8
12_01_0949 - 9434951-9435131,9435555-9435682,9436493-9436666,943... 29 3.7
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 29 3.7
07_01_0479 + 3606663-3607448 29 4.9
05_07_0206 - 28405109-28406671 29 6.5
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 29 6.5
02_05_0989 - 33343233-33344417 28 8.5
01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728 28 8.5
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 33.5 bits (73), Expect = 0.23
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Frame = +2
Query: 254 PDTERP--YAVNQYGLYNRNDIPPQSRPEPELGQN-----FAVYDPDTRQR----TSTAI 400
PDT RP VN + +PP+ RP P +G + F YDP R + T
Sbjct: 126 PDTHRPAIVVVNPATRWCSPPLPPR-RP-PRMGASTFPADFLAYDPAASSRYEVLSVTCF 183
Query: 401 NRNCTAPGCCVP 436
R C+A CC+P
Sbjct: 184 RRRCSACSCCLP 195
>06_01_0145 + 1092764-1093351
Length = 195
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +3
Query: 645 GSPGDQGXPGIPXXXGCXGTDGDPXXXGPXGSXGPR-GYXGSKGXXXXXG 791
G PG G PG P G G G G G G R G G +G G
Sbjct: 16 GEPGQPGEPGQPGGRGRGGRGGRGGRGGAGGRLGVRHGRRGRRGGGGARG 65
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +3
Query: 645 GSPGDQGXPGIPXXXGCXGTDGDPXXXGPXGSXGPRGYXGSKGXXXXXG 791
G PG G PG G G DG G G G RG G +G G
Sbjct: 114 GGPGGDGGPG---GIGGRGGDGGCGGVGGRGRKGGRGGRGGRGGSGGFG 159
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 645 GSPGDQGXPGIPXXXGCXGTDGDPXXXGPXGSXGPRGYXGSKGXXXXXG 791
G G PG G G DG P G G G G G +G G
Sbjct: 99 GGAGGNAGPGGVGGKGGPGGDGGPGGIGGRGGDGGCGGVGGRGRKGGRG 147
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +2
Query: 224 PPTNWPREVAPDTERPYAVNQYGLYNRNDIPPQSRPEPELGQNFAVYDPDT 376
PP+ P P E P A YG + PP P PE GQ Y P T
Sbjct: 191 PPSTPPGYGQPAPECPPADPGYG-QPAPECPPPPTPAPECGQPAPEYPPST 240
>12_01_0949 -
9434951-9435131,9435555-9435682,9436493-9436666,
9436978-9437193,9437376-9437522
Length = 281
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -1
Query: 345 PNSGSGLDWGGISFLLYNPY*FTAYGRSVSGATSRGQLVGGKXLEYMLFQSAYL 184
P++ GL+W +++ +Y+P F S+ TS+ ++VG L +YL
Sbjct: 11 PSACLGLNWTWLAWPIYSPIRFLTICSSIYLITSKIEIVGPYPLHTQALPQSYL 64
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 224 PPTNWPREVAPDTERPYAVNQYGLYNRNDIPPQSRPEPELGQNFAVYD 367
PP + P P + P + Y Y+R P S EP +A YD
Sbjct: 152 PPYDRPNYPPPSPQEPVRNSYYMSYDRPSYPAASPQEPTRTSYYASYD 199
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 763 PX*PRGP*EPXGPXXXGSPSVPXQPXXXGIPGXPWSPG 650
P P GP P GP G P + G+PG P PG
Sbjct: 195 PAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGP-PPG 231
>05_07_0206 - 28405109-28406671
Length = 520
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 323 SRPEPELGQNFAVYDPDTRQRTSTAINRNCT 415
+RP P +FA Y PD ++ S A NCT
Sbjct: 103 TRPRPVYLVDFACYKPDDERKCSRARFMNCT 133
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 54 CIPGTNGARARDSGAARLVPWWSTYC 131
C + GA A +G + L+PWWS C
Sbjct: 598 CSGQSFGAGAYGNGPSSLLPWWSASC 623
>02_05_0989 - 33343233-33344417
Length = 394
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 371 PDHTQRSFALILVPVLI-GVVYRFYYTTHIDLQRMVAPYLAP 249
P + S AL+L+P+L+ G +Y F Y +LQ ++ P
Sbjct: 78 PKLSASSKALVLLPLLLLGFIYLFVYPKEFELQALMMSSCGP 119
>01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728
Length = 316
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 179 DDRYADWNNIYSRXLPPTNWPREVAPD 259
D + W+ Y+ LPP W RE+ D
Sbjct: 258 DQYHPTWHRSYAPLLPPEEWERELQGD 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,842,144
Number of Sequences: 37544
Number of extensions: 370311
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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