Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M24
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    50   3e-06
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    48   1e-05
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    31   1.3  
02_05_0686 - 30900748-30902167,30903442-30904742                       30   3.0  
08_01_0982 - 9947192-9947474,9948649-9948950                           29   5.2  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    28   9.0  
07_03_1433 + 26513728-26514135,26525534-26526280                       28   9.0  
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515...    28   9.0  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 27/69 (39%), Positives = 38/69 (55%)
 Frame = +3

Query: 351 CYXMMRKQIXEXVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLAH 530
           C   + +QI     AS  Y ++ AYF  D V   GFAK F +++ EER+HA KL+ Y   
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150

Query: 531 EGXADRLRN 557
            G   RL++
Sbjct: 151 RGGRVRLQS 159


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 25/55 (45%), Positives = 33/55 (60%)
 Frame = +3

Query: 393 ASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLAHEGXADRLRN 557
           AS  Y ++ AYF  D V   GFAK F +++ EER+HA KLI Y    G   RL++
Sbjct: 137 ASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQS 191


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +2

Query: 761 PPPTLXRAXASTPPXXMIGPXXPRPSGTXXSFRXRTPPS 877
           PPP   R     PP    GP   RPS    + R R PP+
Sbjct: 36  PPPPPPRRRTPPPPPPGSGPGPQRPSYLSVALRRRGPPA 74


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = +2

Query: 761 PPPTLXRAXASTPPXXMIGPXXPRPSGTXXSFRXRTPPSXXDPXXXFXPXFPP 919
           PPP    A    PP     P  P P G       + PP    P     P  PP
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369


>08_01_0982 - 9947192-9947474,9948649-9948950
          Length = 194

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 609 CAALPRRVXGGPVRDEVGYGAGQLAPHEPGSQ 514
           C    R   GG +RD +GYG+G     E G +
Sbjct: 17  CGRKTRARDGGGLRDNLGYGSGSFPREETGQR 48


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 23/67 (34%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
 Frame = +2

Query: 731 AXPXTXXTRGPPPTLXRAXASTPPXXMIGPXX----PRPSGTXXSFRXRTPPSXXDPXXX 898
           A P T    G PP    A  +TPP     P      P PS T       TPP    P   
Sbjct: 16  ATPPTAAA-GTPPLAVPA-TNTPPNPATTPTPLTPNPNPSPTLPPPPMSTPPVVAPPMHS 73

Query: 899 FXPXFPP 919
           F P F P
Sbjct: 74  FAPSFRP 80


>07_03_1433 + 26513728-26514135,26525534-26526280
          Length = 384

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 23/74 (31%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
 Frame = +2

Query: 710 GSTTCXG----AXPXTXXTRGPPPTLXRAXASTPPXXMIGPXXPRPSGTXXSFRXRTPPS 877
           GS TC G    A P T  T   PP+L  +   T P     P  P P           PPS
Sbjct: 15  GSVTCQGYTGNASPPTPITYPSPPSLSPSMPPTYPPPSSTPPSPAPVSPSPP-TTYPPPS 73

Query: 878 XXDPXXXFXPXFPP 919
              P        PP
Sbjct: 74  TTPPNPAPTSPSPP 87


>02_05_0624 -
           30451032-30451140,30451294-30451409,30451506-30451580,
           30452033-30452093,30452198-30452424
          Length = 195

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 411 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLAHEGXADRLRNR 560
           A+  YF + TV  P  A  FF +   +RE  T L+D L  +      R R
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELLSDQHLKNYRMR 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,954,193
Number of Sequences: 37544
Number of extensions: 371656
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)