Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M24
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    47   2e-05
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    43   3e-04
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    29   3.5  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    29   4.7  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 24/51 (47%), Positives = 31/51 (60%)
 Frame = +3

Query: 363 MRKQIXEXVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLI 515
           + KQI   + AS  YL+M  YF  D V  P  AK F + + EEREHAT+L+
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELM 66


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/65 (36%), Positives = 35/65 (53%)
 Frame = +3

Query: 363 MRKQIXEXVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLAHEGXA 542
           + KQI   + AS  YL+M A+F  D +     AK F + + EER HAT+L+   A  G  
Sbjct: 16  VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGR 75

Query: 543 DRLRN 557
             ++N
Sbjct: 76  VAMQN 80


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 220 SYNHRFFDDIQKNMCS*KQ*LYKSSLY 140
           SYNHRFF  I K++ S K+ LYK+ ++
Sbjct: 99  SYNHRFF--IHKDISSDKKFLYKNDIF 123


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 752 TRGPPPTLXRAXASTPPXXMIGPXXPRPSGT 844
           TRGPPP    A    P   ++    PRPS T
Sbjct: 617 TRGPPPPTRPASVIAPSSSVVPKSQPRPSPT 647


>AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical
           protein H28G03.2c protein.
          Length = 275

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +2

Query: 707 PGSTTCXGAXPXTXXTRGPPPTLXRAXASTPPXXMIGPXXPRPSGT 844
           P   +  G  P +     PPPT   A    PP  +     P PSGT
Sbjct: 121 PPPMSLLGPPPFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPPPSGT 166


>AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical
           protein H28G03.2b protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +2

Query: 707 PGSTTCXGAXPXTXXTRGPPPTLXRAXASTPPXXMIGPXXPRPSGT 844
           P   +  G  P +     PPPT   A    PP  +     P PSGT
Sbjct: 144 PPPMSLLGPPPFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPPPSGT 189


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +2

Query: 707 PGSTTCXGAXPXTXXTRGPPPTLXRAXASTPPXXMIGPXXPRPSGT 844
           P   +  G  P +     PPPT   A    PP  +     P PSGT
Sbjct: 394 PPPMSLLGPPPFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPPPSGT 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,491
Number of Sequences: 27780
Number of extensions: 273137
Number of successful extensions: 499
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)