Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M23
         (983 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.25 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.3  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   7.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 26/83 (31%), Positives = 30/83 (36%)
 Frame = +2

Query: 683 PXXXAXLPSAPFRPGLXXXPXAPGRSFAWXSXXAPPXPPXAPLXSXXXXXNPYRPHASNN 862
           P   +  PSAP  P L   P AP  S    +  APP PP AP+        P  P     
Sbjct: 418 PTPPSLPPSAP--PSLP--PSAPP-SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472

Query: 863 LPLHSXXXXXSPXXPXASXHPXP 931
            P        +P  P AS    P
Sbjct: 473 APAPPPAPAPAPAAPVASIAELP 495


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
 Frame = +2

Query: 704  PSAPFRPGLXXXPXAPGRSFAWXSXXAPPX--PPXAPLXSXXXXXNPYRPHASNNLPLHS 877
            P+AP  P +   P  P  +        PP   PP APL S     +P  P A   +P   
Sbjct: 963  PAAP--PSIP--PPLPVSNILSSPTSEPPKDHPPSAPL-SKPVSTSPAAPLA--RVPPVP 1015

Query: 878  XXXXXSPXXPXASXHPXPFPXPXXRPPXP 964
                 +P  P  S    P P P   PP P
Sbjct: 1016 KLSSKAPPVPLPSADAPPIPVPSTAPPVP 1044



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 21/86 (24%), Positives = 27/86 (31%)
 Frame = +2

Query: 707  SAPFRPGLXXXPXAPGRSFAWXSXXAPPXPPXAPLXSXXXXXNPYRPHASNNLPLHSXXX 886
            +AP  P     P  P  S    S   P   P + + S           A + +P      
Sbjct: 1039 TAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPS 1098

Query: 887  XXSPXXPXASXHPXPFPXPXXRPPXP 964
              +P  P  S    P P P   PP P
Sbjct: 1099 VAAPPVPKPSVAVPPVPAPSGAPPVP 1124


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 348 HKCENFVXXLHLYVLIDSPASRIPKWLIIQAKGGXTRW-CADM 473
           H   +F   L   V + S A RIP +L   A    T W CA++
Sbjct: 254 HSLHSFPSALEYVVPVFSDARRIPSYLANDANESSTIWECANI 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,201
Number of Sequences: 5004
Number of extensions: 53290
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)