Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_M23
(983 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 34 0.15
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 33 0.35
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 32 0.81
10_08_0214 - 15915156-15915713 31 1.4
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.9
01_05_0490 + 22672241-22674679 29 4.3
06_03_1326 - 29355467-29355817 29 5.7
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 7.5
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 29 7.5
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 28 9.9
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 28 9.9
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 34.3 bits (75), Expect = 0.15
Identities = 25/84 (29%), Positives = 29/84 (34%)
Frame = +2
Query: 707 SAPFRPGLXXXPXAPGRSFAWXSXXAPPXPPXAPLXSXXXXXNPYRPHASNNLPLHSXXX 886
S P P P P ++A S PP PP PL + P P LP S
Sbjct: 562 SPPPPPPPPPPPPLPQSNYA--SSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPP 619
Query: 887 XXSPXXPXASXHPXPFPXPXXRPP 958
P P + P P P PP
Sbjct: 620 PPPPPPPLPNHSVLPPPPPPPPPP 643
Score = 29.5 bits (63), Expect = 4.3
Identities = 28/91 (30%), Positives = 32/91 (35%)
Frame = +2
Query: 701 LPSAPFRPGLXXXPXAPGRSFAWXSXXAPPXPPXAPLXSXXXXXNPYRPHASNNLPLHSX 880
+PSAP P P P S APP PP PL + NP P PL +
Sbjct: 708 VPSAPPPP----PPPPPANRSNGPSAPAPPLPP--PLPAAANKRNPPAPPPP---PLMTG 758
Query: 881 XXXXSPXXPXASXHPXPFPXPXXRPPXPXRG 973
+P P P P PP P G
Sbjct: 759 KKAPAPPPPPPQAPKPPGTVP---PPPPLHG 786
Score = 28.3 bits (60), Expect = 9.9
Identities = 25/93 (26%), Positives = 29/93 (31%)
Frame = +2
Query: 665 PXXXXXPXXXAXLPSAPFRPGLXXXPXAPGRSFAWXSXXAPPXPPXAPLXSXXXXXNPYR 844
P P +PS P P P P RS PP PP PL + P
Sbjct: 587 PPPPPPPLPNCLVPSPP--PPPPPPPILPNRSVP------PPPPPPPPLPNHSVLPPPPP 638
Query: 845 PHASNNLPLHSXXXXXSPXXPXASXHPXPFPXP 943
P +LP +P P P P P
Sbjct: 639 PPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPP 671
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 33.1 bits (72), Expect = 0.35
Identities = 28/94 (29%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Frame = +2
Query: 695 AXLPSAPFRPGLXXXPXAPGRSFAWXSXXAPPXPPXAPLXSXXXXXNPYRPHAS-NNLPL 871
A S+P L P P S A +PP PP +P+ S P+RP S PL
Sbjct: 8 AAAASSPAAAVLPPKPFKPLSSAAPFRRPSPPPPPPSPVPSPAPPPPPHRPSPSPPPNPL 67
Query: 872 HS---XXXXXSPXXPXASXHPXPFPXPXXRPPXP 964
S SP P P P P P
Sbjct: 68 SSKLWLSSKLSPPPPETLEQPEPSTTTTTTTPPP 101
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 31.9 bits (69), Expect = 0.81
Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = -3
Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYG-FXXXXXDXSGAX 799
G G GGR G G G G E+ G G GR E+ G G SG
Sbjct: 66 GGGGGGGGRGYGGGGGGGGYESGGGRGYGGG-----GRGYESGGGRGPGGGGRGHESGGG 120
Query: 798 GGXGGAXXEXQAKERPGAXGXXXSP 724
GG GG + R GA +P
Sbjct: 121 GGRGGNVWAQPGRGRGGAPAPAPAP 145
>10_08_0214 - 15915156-15915713
Length = 185
Score = 31.1 bits (67), Expect = 1.4
Identities = 30/108 (27%), Positives = 31/108 (28%), Gaps = 4/108 (3%)
Frame = -3
Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYGFXXXXXDXSGAXG 796
GP G GG G G G G G E G A G YG G G
Sbjct: 30 GPGGGGGGGGGGEGGGGG--YGGSGYGSGSGYGEGGGSGGAAGGGYGRGGGGGGGGGEGG 87
Query: 795 GXGGAXXEXQAKER----PGAXGXXXSPGRNGAEGRXAXXXGSXXXXG 664
G G Q GA G G G +G A G G
Sbjct: 88 GSGSGYGSGQGSGYGAGVGGAGGYGSGGGGGGGQGGGAGGYGQGSGYG 135
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 1.9
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
Frame = +2
Query: 704 PSAPFRPGLXXXPXAPGRSFAWXSXXAP-PXPPXAPLXSXXXXXNPYRPHASNNLPLHSX 880
PS P PG P P +S A + +P P PP P + P P A+ P
Sbjct: 286 PSLPLPPG-RESPSRP-QSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPP---- 339
Query: 881 XXXXSPXXPXASXHPXPFPXPXXRPPXP 964
P P A P P P PP P
Sbjct: 340 PPKGPPPPPPAKGPPPPPPPKGPSPPPP 367
Score = 29.1 bits (62), Expect = 5.7
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = +2
Query: 782 APPXPPXAPLXSXXXXXNPYRPHASNNLPLHSXXXXXSPXXPXASXHPXPFPXPXXR-PP 958
A P P L +P RP + + S P A+ P P P P PP
Sbjct: 279 ARPASPSPSLPLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPP 338
Query: 959 XPXRGP 976
P +GP
Sbjct: 339 PPPKGP 344
>01_05_0490 + 22672241-22674679
Length = 812
Score = 29.5 bits (63), Expect = 4.3
Identities = 17/65 (26%), Positives = 22/65 (33%)
Frame = +2
Query: 782 APPXPPXAPLXSXXXXXNPYRPHASNNLPLHSXXXXXSPXXPXASXHPXPFPXPXXRPPX 961
APP PP P + P +P + P P P + +P P PP
Sbjct: 637 APPQPPPPPPPTTRRSRKPPQPPSRPAPPPPPPPQQQPPFYPRRAVVYYTYPLPPPSPPL 696
Query: 962 PXRGP 976
P P
Sbjct: 697 PPPPP 701
>06_03_1326 - 29355467-29355817
Length = 116
Score = 29.1 bits (62), Expect = 5.7
Identities = 22/89 (24%), Positives = 28/89 (31%)
Frame = -3
Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYGFXXXXXDXSGAXG 796
G G GG+ G G G G G G G + G G SG
Sbjct: 5 GGGGGGGGKGGGGGGGGGKGGGGGSGGGGRSGGGGGGGGGKGGGEGGSGKYGGGYSGGHA 64
Query: 795 GXGGAXXEXQAKERPGAXGXXXSPGRNGA 709
G GG + G +PG +G+
Sbjct: 65 GGGGGAGKSGGYHGGGGGDSMKAPGGDGS 93
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 665 PXXXXXPXXXAXLPSAPFRPGLXXXPXAPGRSFAWXSXXAPPXPPXAPL 811
P P A P P P P P R PP PP PL
Sbjct: 233 PPPPPKPANIAGAPGLPLPPPPPPPPGPPPREIVPGQTLLPPPPPPRPL 281
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 28.7 bits (61), Expect = 7.5
Identities = 19/60 (31%), Positives = 21/60 (35%)
Frame = +2
Query: 785 PPXPPXAPLXSXXXXXNPYRPHASNNLPLHSXXXXXSPXXPXASXHPXPFPXPXXRPPXP 964
PP PP + P RP A+ L H SP P P P P RP P
Sbjct: 144 PPPPPPMAVAPPPFLPPPLRPFAAPLLFHHDMASPVSPVSPIYYVGPPP-PPEALRPLPP 202
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 28.3 bits (60), Expect = 9.9
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 701 LPSAPFRPGLXXXPXA-PGRSFAWXSXXAPPXPPXA 805
LPS P P L A P RSF+W PP P A
Sbjct: 48 LPSPPRLPPLLVPFAAVPARSFSWYPRSPPPAGPAA 83
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 28.3 bits (60), Expect = 9.9
Identities = 25/78 (32%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Frame = +2
Query: 749 PGRSFAWX--SXXAPPXPPXAPLXSXXXXXNPYRPHASNNLPLHSXXXXXSPXXPXASXH 922
PGR A S APP PP A S P P A P + +P P A
Sbjct: 66 PGRQAASRAPSPPAPPSPPQASAPSPPHAPAPSPPQA----PAMTPPQAPAPTPPQA--- 118
Query: 923 PXPFPXPXXRPPXPXRGP 976
P P P P P P
Sbjct: 119 PRPAPSKSRAPQAPPPAP 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,535,228
Number of Sequences: 37544
Number of extensions: 387024
Number of successful extensions: 1215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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