Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M23
         (983 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022850-1|AAY55266.1|  538|Drosophila melanogaster IP13040p pro...    35   0.20 
AE013599-1243|AAF58688.1|  610|Drosophila melanogaster CG13214-P...    35   0.20 
AE014298-3143|AAF50813.1|  183|Drosophila melanogaster CG10918-P...    31   2.4  
X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protei...    29   9.8  
M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.     29   9.8  
AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA ...    29   9.8  

>BT022850-1|AAY55266.1|  538|Drosophila melanogaster IP13040p
           protein.
          Length = 538

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 29/105 (27%), Positives = 33/105 (31%), Gaps = 1/105 (0%)
 Frame = -3

Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYGFXXXXXDXSGAX- 799
           G   G GG   G G+G G   A G  G        RG      G  G         G   
Sbjct: 184 GGGSGFGGGGAGGGSGGGGGGAGGGGGYGSGGGSGRGGAPGGPGAPGGGGFGGQGGGGGY 243

Query: 798 GGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGRXAXXXGSXXXXG 664
           GG GG      +   PG+ G     G+ GA G      G     G
Sbjct: 244 GGAGGGAGRGGSPGGPGSPGGGGFGGQGGAGGGYGGGGGGGRGGG 288



 Score = 29.1 bits (62), Expect = 9.8
 Identities = 27/91 (29%), Positives = 29/91 (31%)
 Frame = -3

Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYGFXXXXXDXSGAXG 796
           GP    GG   G G G G   A G  G         G      G  GF        G  G
Sbjct: 225 GPGAPGGGGFGGQGGGGGYGGAGGGAGRGGSPG---GPGSPGGG--GFGGQGGAGGGYGG 279

Query: 795 GXGGAXXEXQAKERPGAXGXXXSPGRNGAEG 703
           G GG      A   PG+ G     G+ G  G
Sbjct: 280 GGGGGRGGGGAPGAPGSPGGGGFGGQGGGGG 310



 Score = 29.1 bits (62), Expect = 9.8
 Identities = 28/94 (29%), Positives = 30/94 (31%), Gaps = 2/94 (2%)
 Frame = -3

Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYGFXXXXXDX--SGA 802
           G   G GGR  G G   G   A G  G      +  G      G  G           G 
Sbjct: 340 GGYGGGGGR--GGGGAPGAPGAPGSPGGGGFGGQGGGGGFGGGGGRGGAPGAPGSPGGGG 397

Query: 801 XGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGR 700
            GG GG         R GA G   SPG  G  G+
Sbjct: 398 FGGQGGGGGYGGGAGRGGAPGAPGSPGGGGFGGQ 431


>AE013599-1243|AAF58688.1|  610|Drosophila melanogaster CG13214-PA,
           isoform A protein.
          Length = 610

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 29/105 (27%), Positives = 33/105 (31%), Gaps = 1/105 (0%)
 Frame = -3

Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYGFXXXXXDXSGAX- 799
           G   G GG   G G+G G   A G  G        RG      G  G         G   
Sbjct: 256 GGGSGFGGGGAGGGSGGGGGGAGGGGGYGSGGGSGRGGAPGGPGAPGGGGFGGQGGGGGY 315

Query: 798 GGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGRXAXXXGSXXXXG 664
           GG GG      +   PG+ G     G+ GA G      G     G
Sbjct: 316 GGAGGGAGRGGSPGGPGSPGGGGFGGQGGAGGGYGGGGGGGRGGG 360



 Score = 29.1 bits (62), Expect = 9.8
 Identities = 27/91 (29%), Positives = 29/91 (31%)
 Frame = -3

Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYGFXXXXXDXSGAXG 796
           GP    GG   G G G G   A G  G         G      G  GF        G  G
Sbjct: 297 GPGAPGGGGFGGQGGGGGYGGAGGGAGRGGSPG---GPGSPGGG--GFGGQGGAGGGYGG 351

Query: 795 GXGGAXXEXQAKERPGAXGXXXSPGRNGAEG 703
           G GG      A   PG+ G     G+ G  G
Sbjct: 352 GGGGGRGGGGAPGAPGSPGGGGFGGQGGGGG 382



 Score = 29.1 bits (62), Expect = 9.8
 Identities = 28/94 (29%), Positives = 30/94 (31%), Gaps = 2/94 (2%)
 Frame = -3

Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYGFXXXXXDX--SGA 802
           G   G GGR  G G   G   A G  G      +  G      G  G           G 
Sbjct: 412 GGYGGGGGR--GGGGAPGAPGAPGSPGGGGFGGQGGGGGFGGGGGRGGAPGAPGSPGGGG 469

Query: 801 XGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGR 700
            GG GG         R GA G   SPG  G  G+
Sbjct: 470 FGGQGGGGGYGGGAGRGGAPGAPGSPGGGGFGGQ 503


>AE014298-3143|AAF50813.1|  183|Drosophila melanogaster CG10918-PA
           protein.
          Length = 183

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 38/128 (29%), Positives = 43/128 (33%), Gaps = 4/128 (3%)
 Frame = -3

Query: 963 GXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYGFXXXXXDXSGAXGGXGG 784
           G GGR  G G G G   + G  G         GR    +G  G        +G  GG GG
Sbjct: 20  GGGGRRGGRGGGGGGGRSLGGFG---------GRGGGGFGGRG----GPGGTGGPGGFGG 66

Query: 783 AXXEXQAKERPGAXGXXXSPGRNGAEGRXAXXXGSXXXXGCRXXPNR----MSSTXSVTA 616
                      G  G    PGR G  G      G     G R  P R     ++T S  A
Sbjct: 67  PG-RFGGPGGLGGGGGFGGPGRFGGPGSFNGGFGGPGGWGPRPRPRRPRPWWTTTESSLA 125

Query: 615 XWSGPTSS 592
             S  TSS
Sbjct: 126 DTSSTTSS 133


>X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protein
           protein.
          Length = 1299

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 414 FSRQVNQLIHKDEGXTRNFHIYVLSQNXXSYITIQF 307
           FSR+V QL+ K      N+ IYV S      I  +F
Sbjct: 389 FSREVEQLLRKQSRIATNYDIYVFSSAALDDILAKF 424


>M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.
          Length = 1286

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 414 FSRQVNQLIHKDEGXTRNFHIYVLSQNXXSYITIQF 307
           FSR+V QL+ K      N+ IYV S      I  +F
Sbjct: 389 FSREVEQLLRKQSRIATNYDIYVFSSAALDDILAKF 424


>AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA
           protein.
          Length = 1286

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 414 FSRQVNQLIHKDEGXTRNFHIYVLSQNXXSYITIQF 307
           FSR+V QL+ K      N+ IYV S      I  +F
Sbjct: 389 FSREVEQLLRKQSRIATNYDIYVFSSAALDDILAKF 424


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,301,751
Number of Sequences: 53049
Number of extensions: 622432
Number of successful extensions: 1703
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4955967126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)