Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_M23
(983 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 33 0.31
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.7
AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 31 1.7
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 30 2.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.8
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 3.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.8
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 3.8
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 3.8
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 3.8
Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.9
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 8.9
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 28 8.9
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 28 8.9
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 28 8.9
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 28 8.9
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 33.1 bits (72), Expect = 0.31
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Frame = +2
Query: 704 PSAPFRPGLXXXPXAPGRSFAWXSXXAPPXPPXA-PLXSXXXXXNPYRPHASNNLPLHSX 880
P AP+ P P S+ + P PP P + P P+ + +P +
Sbjct: 68 PPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAP 127
Query: 881 XXXXSPXXPXASXHPXPFPXPXXRPPXP 964
P P +P P P PP P
Sbjct: 128 YQQQPPPPPPPPHYPPPPPHYPPPPPAP 155
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = +2
Query: 740 PXAPGRSFAWXSXXAPPXPPXAPLXSXXXXXNPYRPHASNNLPLHSXXXXXSPXXPXASX 919
P P +S A S PP PP P P RP + P +P P
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTP--PSPQRRPPRTPPSPEPRN 182
Query: 920 HPXPFPXPXXRPP 958
P P P PP
Sbjct: 183 PPRTPPSPIPPPP 195
>AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical
protein Y57A10A.11 protein.
Length = 458
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 798 GGXGGAXXEXQAKERPGAXGXXXSPGRNGAEG 703
GG GA E A PG G +PGR+G G
Sbjct: 401 GGDQGAPGEPGADGEPGMDGVPGNPGRDGTHG 432
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -3
Query: 807 GAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEG 703
G GG GG PGA G PGR GA G
Sbjct: 91 GGGGGGGGQCSTCCRPGPPGAGGTPGKPGRPGAPG 125
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 807 GAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGR 700
GA GG GG PG G SPG+ G G+
Sbjct: 86 GAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGK 121
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/104 (25%), Positives = 29/104 (27%)
Frame = +2
Query: 665 PXXXXXPXXXAXLPSAPFRPGLXXXPXAPGRSFAWXSXXAPPXPPXAPLXSXXXXXNPYR 844
P P P P PG+ P P S W PP PP P
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMW--PPPPPPPPGRTPGPPGMPGMPPP 319
Query: 845 PHASNNLPLHSXXXXXSPXXPXASXHPXPFPXPXXRPPXPXRGP 976
P S P P P +P P P P P GP
Sbjct: 320 PPPSRFGP--PGMGGMPPPPPPGMRYPGGMPPPPP-PRYPSAGP 360
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 807 GAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGR 700
GA GG GG PG G SPG+ G G+
Sbjct: 86 GAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGK 121
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/104 (25%), Positives = 29/104 (27%)
Frame = +2
Query: 665 PXXXXXPXXXAXLPSAPFRPGLXXXPXAPGRSFAWXSXXAPPXPPXAPLXSXXXXXNPYR 844
P P P P PG+ P P S W PP PP P
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMW--PPPPPPPPGRTPGPPGMPGMPPP 329
Query: 845 PHASNNLPLHSXXXXXSPXXPXASXHPXPFPXPXXRPPXPXRGP 976
P S P P P +P P P P P GP
Sbjct: 330 PPPSRFGP--PGMGGMPPPPPPGMRYPGGMPPPPP-PRYPSAGP 370
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 807 GAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGR 700
GA GG GG PG G SPG+ G G+
Sbjct: 86 GAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGK 121
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 807 GAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGR 700
GA GG GG PG G SPG+ G G+
Sbjct: 86 GAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGK 121
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.5 bits (63), Expect = 3.8
Identities = 29/131 (22%), Positives = 34/131 (25%), Gaps = 2/131 (1%)
Frame = -3
Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEA--WGRYGFXXXXXDXSGA 802
G R G GG G GN G G +W G WG G +G
Sbjct: 37 GNRWGGGGGPGGWGNNGG---GGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGG 93
Query: 801 XGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGRXAXXXGSXXXXGCRXXPNRMSSTXSV 622
G GG + G +G G G G R R +
Sbjct: 94 GGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNG 153
Query: 621 TAXWSGPTSSG 589
W G G
Sbjct: 154 GGDWGGNGGGG 164
>Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical
protein C12D8.8 protein.
Length = 295
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 810 SGAXGGXG--GAXXEXQAKERPGAXGXXXSPGRNGAEGR 700
SG G G G +PG G PGRNGA+G+
Sbjct: 175 SGPRGNDGFPGLPGPPGENGQPGQSGKDGQPGRNGADGK 213
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.7 bits (61), Expect = 6.7
Identities = 26/104 (25%), Positives = 30/104 (28%)
Frame = -3
Query: 975 GPRXGXGGRXXGXGNGXG*XEAXGXXGXXXXXXEWRGRLLEAWGRYGFXXXXXDXSGAXG 796
G G GG G G G G G G G WG D + G
Sbjct: 51 GTGGGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWG-------GQDGGSSAG 103
Query: 795 GXGGAXXEXQAKERPGAXGXXXSPGRNGAEGRXAXXXGSXXXXG 664
G GG+ Q G G S +G G G+ G
Sbjct: 104 GWGGSQGGSQGGSSGGWGGSSRSDSGSGQGGWGGQQGGNSNAGG 147
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = -3
Query: 810 SGAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGRXAXXXGSXXXXGCRXXPNRMSST 631
+GA G G A + A PGA G PG G +G + G+ G P + + +
Sbjct: 153 AGAPGPAGPAG-DAGANGNPGAPGQDGQPGAPGNKG-PSGPNGNPGAPGAPGQPGQDAPS 210
Query: 630 XSVTAXWSGP 601
+T GP
Sbjct: 211 EPITPGAPGP 220
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = -3
Query: 810 SGAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGRXAXXXGSXXXXGCRXXPNRMSST 631
+GA G G A + A PGA G PG G +G + G+ G P + + +
Sbjct: 153 AGAPGPAGPAG-DAGANGNPGAPGNDGQPGAPGNKG-PSGPNGNPGAPGAPGQPGQDAPS 210
Query: 630 XSVTAXWSGP 601
+T GP
Sbjct: 211 EPITPGAPGP 220
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = -3
Query: 810 SGAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGRXAXXXGSXXXXGCRXXPNRMSST 631
+GA G G A + A PGA G PG G +G + G+ G P + + +
Sbjct: 153 AGAPGPAGPAG-DAGANGNPGAPGNDGQPGAPGNKG-PSGPNGNPGAPGAPGQPGQDAPS 210
Query: 630 XSVTAXWSGP 601
+T GP
Sbjct: 211 EPITPGAPGP 220
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Frame = +2
Query: 785 PPXPPXAPLXSXXXXXNPYRPHASNNLPLHSXXXXXSPXXPXASXHPXPFPXPXXRP--- 955
P PP AP S P P ++LP S P P P P RP
Sbjct: 57 PSSPPPAPRPSG----QPPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHPSRRPRPTRL 112
Query: 956 PXPXRGP 976
P P R P
Sbjct: 113 PRPSRSP 119
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -3
Query: 807 GAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEG 703
G GG GG + A RPGA G PG G G
Sbjct: 168 GPTGGQGGPGEQGDAG-RPGAAGRPGPPGPRGEPG 201
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -3
Query: 807 GAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEG 703
G GG GG + A RPGA G PG G G
Sbjct: 168 GPTGGQGGPGEQGDAG-RPGAAGCPGPPGPRGEPG 201
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = -3
Query: 810 SGAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGRXAXXXGSXXXXGCRXXPNRMSST 631
+GA G G A + A PGA G PG G +G + G+ G P + + +
Sbjct: 153 AGAPGPAGPAG-DAGANGNPGAPGNDGQPGAPGNKG-PSGPNGNPGAPGAPGQPGQDAPS 210
Query: 630 XSVTAXWSGP 601
+T GP
Sbjct: 211 EPITPGAPGP 220
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = -3
Query: 810 SGAXGGXGGAXXEXQAKERPGAXGXXXSPGRNGAEGRXAXXXGSXXXXGCRXXPNRMSST 631
+GA G G A + A PGA G PG G +G + G+ G P + + +
Sbjct: 153 AGAPGPAGPAG-DAGANGNPGAPGNDGQPGAPGNKG-PSGPNGNPGAPGAPGQPGQDAPS 210
Query: 630 XSVTAXWSGP 601
+T GP
Sbjct: 211 EPITPGAPGP 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,756,263
Number of Sequences: 27780
Number of extensions: 324208
Number of successful extensions: 1789
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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