Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M23
         (983 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = +2

Query: 782  APPXPPXAPLXSXXXXX--NPYRPHASNNLPLHSXXXXXSP 898
            APP  P   L +          RPH ++N P+H       P
Sbjct: 1365 APPHSPQITLTATTTNSLTMKVRPHPTDNAPIHGYTIHYKP 1405


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 905 PXASXHPXPFPXPXXRPPXPXRGP 976
           P  S H  P       PP P +GP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGP 46



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 911 ASXHPXPFPXPXXRPPXPXRG 973
           +S  P P P P   P  P RG
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRG 37


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -3

Query: 537 SFNLWVGSGAANHECXRTLGWPC-PHTTS 454
           S N  +G  A   EC +T   PC PH  S
Sbjct: 86  SCNKCIGCSAEKFECSKTSN-PCLPHRNS 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,899
Number of Sequences: 438
Number of extensions: 4511
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)