Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M22
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    29   0.68 
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   2.7  
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    26   8.4  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   8.4  

>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 320 EPHDFTDDDIKAIANLSDLD 379
           EPH FTDD+++ I N   LD
Sbjct: 75  EPHIFTDDELRVIENFKALD 94


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 418 SGRYTESRESRELHSQRDADHGLVSDRKRVSR 513
           + R  E   +RELH Q +A    + +R R +R
Sbjct: 797 AARAAEEEANRELHEQEEAQKRAIEERTRAAR 828


>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 308 KNFHEPHDFTDDDIKAIANLSDLDHFKAVL 397
           ++ H+  DFTD+DI+ + N   +   + +L
Sbjct: 40  RDVHDAIDFTDNDIRYLGNFPRMKRLQTLL 69


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
 Frame = +2

Query: 221 NMAKLLYL--FMMLCFAFGNSDKGDLKFYQEKNFHEPHDFTD-DDIK-AIANLSDLDHFK 388
           N+++++Y+  F+ LCF F N +K     YQ  N    +   + D +K  + + S L    
Sbjct: 116 NLSEVVYMIQFITLCFQFSNIEKLRKLVYQLTNISILNSLDNLDKVKYLLHDSSSLTKAF 175

Query: 389 AVLNEILIPRVVGTPNHEKVGNYIANEM-RTMGWSVTENVFPDHTPVFGTLNFXNIIAEL 565
               E     V   P H  +  +I + + +++ ++ TE      TP+   +N   ++   
Sbjct: 176 DSYKEKRPSIVEKFPLHNLLSRWIHSLLIKSISYAQTEKQEAKVTPLLAIINMSLVLLSA 235

Query: 566 NP 571
            P
Sbjct: 236 FP 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,787
Number of Sequences: 5004
Number of extensions: 55007
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)