Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M22
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0214 - 28451861-28453069                                         31   0.94 
06_03_1270 - 28867654-28868076,28868394-28868785,28869438-288695...    28   8.8  

>05_07_0214 - 28451861-28453069
          Length = 402

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 365 LSDLDHFKAVLNEILIPRVVGTPNHEKVGNYIANEMRTMGWSV 493
           L+ LDH  A++ E ++P ++ TP H   G     E++  GWS+
Sbjct: 69  LARLDHELAIILEAIVPMLMHTPFHIVAG----RELQRYGWSI 107



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 356 IANLSDLDHFKAVLNEILIPRVVGTPNHEKVG 451
           +A L+ LDH  A++ E+++P ++ TP H   G
Sbjct: 268 LARLAKLDHELAIVLEVIVPMLMHTPFHIVAG 299


>06_03_1270 -
           28867654-28868076,28868394-28868785,28869438-28869588,
           28869727-28869906
          Length = 381

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 674 AWRRAPRSQLHQQKHVP*YIYCHNDMPIPSI 582
           AW RA   +L Q  H P + + H  +PIP +
Sbjct: 231 AWLRATSQELQQNLHAPAFAFFH--IPIPEV 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,393,110
Number of Sequences: 37544
Number of extensions: 348757
Number of successful extensions: 695
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)