Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M21
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    27   3.5  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    27   3.5  

>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 487 WERVDKYISSQDTVHSASHSECLXRVDSLIDIAEKIEXFDFATMER 624
           W+    +  +Q+  ++  H EC+  +DS       I   DF+  E+
Sbjct: 137 WDH-GSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQ 181


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 430 LXDFMEEAKMRHGLRTLHFWERVDKYISSQDTVH 531
           L DF+   +  HG + +HF +   +YI  ++ VH
Sbjct: 73  LRDFISLLRTAHGEKKIHFNQFYQEYIRDKNHVH 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,758
Number of Sequences: 5004
Number of extensions: 49066
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)