Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M20
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.10 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
 Frame = +2

Query: 680 PXPPPPPPXPPXXXXX--PPXPRAXPPPXGP 766
           P P P P   P       PP P   PPP GP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +1

Query: 790 PPXNPXPRAPXXXPPXXXPXNXPXPPPPXGXXXXXP 897
           P   P P      P    P N    PPP G     P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 680 PXPPPPPP 703
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 15/56 (26%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
 Frame = +2

Query: 728 PPXPRAXPPPX---GPXPPXXXXXXXXXXXXXXXXXXPPPXXPQTXPPPXPXPAXR 886
           PP P   PPP    GP                            T PPP P PA +
Sbjct: 338 PPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQK 393



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 680 PXPPPPPPXP 709
           P P PPPP P
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 680 PXPPPPPPXPP 712
           P  P PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 681  PXPPPPPP 704
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 686  PPPPPPXP 709
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 689  PPPPPXPP 712
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 680  PXPPPPPP 703
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -3

Query: 531 PXXPGXGGFXXGGGGGXPKKXPXXXGGGGG 442
           P     GG   G  GG         GGGGG
Sbjct: 22  PGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +1

Query: 790 PPXNPXPRAPXXXPPXXXPXNXPXPPPP 873
           PP     R P   P    P   P P PP
Sbjct: 111 PPHPRLRREPEAEPGNNRPVYIPQPRPP 138



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +1

Query: 790 PPXNPXPRAPXXXPPXXXPXNXPXPPPP 873
           PP     R P   P    P   P P PP
Sbjct: 137 PPHPRLRREPEAEPGNNRPVYIPQPRPP 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.156    0.567 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,118
Number of Sequences: 438
Number of extensions: 12319
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)